Literature DB >> 19897605

The Arabidopsis tandem zinc finger protein AtTZF1 traffics between the nucleus and cytoplasmic foci and binds both DNA and RNA.

Marcelo C Pomeranz1, Cyrus Hah, Pei-Chi Lin, Shin Gene Kang, John J Finer, Perry J Blackshear, Jyan-Chyun Jang.   

Abstract

Processing bodies (PBs) are specialized cytoplasmic foci where mRNA turnover and translational repression can take place. Stress granules are related cytoplasmic foci. The CCCH tandem zinc finger proteins (TZFs) play pivotal roles in gene expression, cell fate specification, and various developmental processes. Human TZF binds AU-rich elements at the 3' untranslated region and recruits decapping, deadenylation, and exonucleolytic enzymes to PBs for RNA turnover. Recent genetic studies indicate that plant TZFs are involved in gene regulation and hormone-mediated environmental responses. It is unknown if plant TZFs can bind RNA and be localized to PBs or stress granules. The Arabidopsis (Arabidopsis thaliana) AtTZF1/AtCTH/AtC3H23 was identified as a sugar-sensitive gene in a previous microarray study. It is characterized by a TZF motif that is distinct from the human TZF. Higher plants such as Arabidopsis and rice (Oryza sativa) each have a gene family containing this unique TZF motif. Here, we show that AtTZF1 can traffic between the nucleus and cytoplasmic foci. AtTZF1 colocalizes with markers of PBs, and the morphology of these cytoplasmic foci resembles that of mammalian PBs and stress granules. AtTZF1-associated cytoplasmic foci are dynamic and tissue specific. They can be induced by dark and wound stresses and are preferentially present in actively growing tissues and stomatal precursor cells. Since AtTZF1 can bind both DNA and RNA in vitro, it raises the possibility that AtTZF1 might be involved in DNA and/or RNA regulation.

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Year:  2009        PMID: 19897605      PMCID: PMC2799353          DOI: 10.1104/pp.109.145656

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  93 in total

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4.  Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis.

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Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 5.  Messenger RNA regulation: to translate or to degrade.

Authors:  Ann-Bin Shyu; Miles F Wilkinson; Ambro van Hoof
Journal:  EMBO J       Date:  2008-02-06       Impact factor: 11.598

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Journal:  Plant J       Date:  2008-08-06       Impact factor: 6.417

7.  Recruitment of Nanos to hunchback mRNA by Pumilio.

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9.  Interactions of CCCH zinc finger proteins with mRNA: non-binding tristetraprolin mutants exert an inhibitory effect on degradation of AU-rich element-containing mRNAs.

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Journal:  J Biol Chem       Date:  2002-01-08       Impact factor: 5.157

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  71 in total

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Journal:  EMBO J       Date:  2012-02-10       Impact factor: 11.598

Review 2.  Processing bodies and plant development.

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Journal:  Curr Opin Plant Biol       Date:  2010-11-11       Impact factor: 7.834

Review 3.  Biogenesis, turnover, and mode of action of plant microRNAs.

Authors:  Kestrel Rogers; Xuemei Chen
Journal:  Plant Cell       Date:  2013-07-23       Impact factor: 11.277

4.  Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice.

Authors:  Yi Chen; Aijun Sun; Mei Wang; Zhen Zhu; Pieter B F Ouwerkerk
Journal:  Plant Mol Biol       Date:  2013-11-27       Impact factor: 4.076

5.  AtTZF gene family localizes to cytoplasmic foci.

Authors:  Marcelo Pomeranz; Pei-Chi Lin; John Finer; Jyan-Chyun Jang
Journal:  Plant Signal Behav       Date:  2010-02-18

6.  Can AtTZF1 act as a transcriptional activator or repressor in plants?

Authors:  Marcelo Pomeranz; Li Zhang; John Finer; Jyan-Chyun Jang
Journal:  Plant Signal Behav       Date:  2011-05-01

7.  The Arabidopsis CALLOSE DEFECTIVE MICROSPORE1 gene is required for male fertility through regulating callose metabolism during microsporogenesis.

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Journal:  Plant Physiol       Date:  2014-02-24       Impact factor: 8.340

8.  Expression of CsSEF1 gene encoding putative CCCH zinc finger protein is induced by defoliation and prolonged darkness in cucumber fruit.

Authors:  Akio Tazuke; Munehiko Asayama
Journal:  Planta       Date:  2012-10-25       Impact factor: 4.116

9.  Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa.

Authors:  Wei-Lun Chou; Li-Fen Huang; Jhen-Cheng Fang; Ching-Hui Yeh; Chwan-Yang Hong; Shaw-Jye Wu; Chung-An Lu
Journal:  Plant Mol Biol       Date:  2014-05-08       Impact factor: 4.076

10.  Genome-wide in silico screen for CCCH-type zinc finger proteins of Trypanosoma brucei, Trypanosoma cruzi and Leishmania major.

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