Literature DB >> 19889098

The cobinamide amidohydrolase (cobyric acid-forming) CbiZ enzyme: a critical activity of the cobamide remodelling system of Rhodobacter sphaeroides.

Michael J Gray1, Jorge C Escalante-Semerena.   

Abstract

The chemical structures of cobamides [cobalamin (Cbl)-like compounds] are the same, except for the lower ligand, which in adenosylcobalamin (AdoCbl) is 5,6-dimethylbenzimidazole, and in adenosylpseudocobalamin (AdopseudoCbl) is adenine. Why the lower ligand of cobamides varies and what the mechanism of lower ligand replacement is are long-standing questions in the field of B(12) biosynthesis. Work reported here uncovers the strategy used by the photosynthetic alpha-proteobacterium Rhodobacter sphaeroides to procure the cobamide it needs to grow on acetate as a carbon and energy source. On the basis of genetic and biochemical evidence we conclude that, in R. sphaeroides, the activity of the cobyric acid-producing amidohydrolase CbiZ enzyme is essential for the conversion of AdopseudoCbl into AdoCbl, the cobamide needed for the catabolism of acetate. The CbiZ enzyme uses AdopseudoCbl as a substrate, but not AdoCbl. Implications of these findings for cobamide remodelling in R. sphaeroides and in other CbiZ-containing microorganisms are discussed.

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Year:  2009        PMID: 19889098      PMCID: PMC3062942          DOI: 10.1111/j.1365-2958.2009.06928.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  51 in total

1.  Purification and initial characterization of the Salmonella enterica PduO ATP:Cob(I)alamin adenosyltransferase.

Authors:  Celeste L V Johnson; Marian L Buszko; Thomas A Bobik
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

2.  MAMMALIAN METHYLMALONYL ISOMERASE AND VITAMIN B(12) COENZYMES.

Authors:  P Lengyel; R Mazumder; S Ochoa
Journal:  Proc Natl Acad Sci U S A       Date:  1960-10       Impact factor: 11.205

3.  Mutations in the draT and draG genes of Rhodospirillum rubrum result in loss of regulation of nitrogenase by reversible ADP-ribosylation.

Authors:  J H Liang; G M Nielsen; D P Lies; R H Burris; G P Roberts; P W Ludden
Journal:  J Bacteriol       Date:  1991-11       Impact factor: 3.490

4.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

5.  cobA function is required for both de novo cobalamin biosynthesis and assimilation of exogenous corrinoids in Salmonella typhimurium.

Authors:  J C Escalante-Semerena; S J Suh; J R Roth
Journal:  J Bacteriol       Date:  1990-01       Impact factor: 3.490

6.  Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum.

Authors:  A Schäfer; A Tauch; W Jäger; J Kalinowski; G Thierbach; A Pühler
Journal:  Gene       Date:  1994-07-22       Impact factor: 3.688

7.  Study of an alternate glyoxylate cycle for acetate assimilation by Rhodobacter sphaeroides.

Authors:  Birgit E Alber; Regina Spanheimer; Christa Ebenau-Jehle; Georg Fuchs
Journal:  Mol Microbiol       Date:  2006-07       Impact factor: 3.501

8.  New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressureized atmosphere.

Authors:  W E Balch; R S Wolfe
Journal:  Appl Environ Microbiol       Date:  1976-12       Impact factor: 4.792

9.  Apparent ruminal synthesis and intestinal disappearance of vitamin B12 and its analogs in dairy cows.

Authors:  C L Girard; D E Santschi; S P Stabler; R H Allen
Journal:  J Dairy Sci       Date:  2009-09       Impact factor: 4.034

10.  The integrated microbial genomes (IMG) system.

Authors:  Victor M Markowitz; Frank Korzeniewski; Krishna Palaniappan; Ernest Szeto; Greg Werner; Anu Padki; Xueling Zhao; Inna Dubchak; Philip Hugenholtz; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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  26 in total

1.  Unexpected specificity of interspecies cobamide transfer from Geobacter spp. to organohalide-respiring Dehalococcoides mccartyi strains.

Authors:  Jun Yan; Kirsti M Ritalahti; Darlene D Wagner; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

2.  Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.

Authors:  Chi Ho Chan; Sean A Newmister; Keenan Talyor; Kathy R Claas; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  Biochim Biophys Acta       Date:  2013-10-10

3.  Identification of specific corrinoids reveals corrinoid modification in dechlorinating microbial communities.

Authors:  Yujie Men; Erica C Seth; Shan Yi; Terence S Crofts; Robert H Allen; Michiko E Taga; Lisa Alvarez-Cohen
Journal:  Environ Microbiol       Date:  2014-06-02       Impact factor: 5.491

4.  Rhodobacterales use a unique L-threonine kinase for the assembly of the nucleotide loop of coenzyme B12.

Authors:  Norbert K Tavares; Chelsey M VanDrisse; Jorge C Escalante-Semerena
Journal:  Mol Microbiol       Date:  2018-10-03       Impact factor: 3.501

Review 5.  Decoding molecular interactions in microbial communities.

Authors:  Nicole A Abreu; Michiko E Taga
Journal:  FEMS Microbiol Rev       Date:  2016-07-13       Impact factor: 16.408

6.  Flexible Cobamide Metabolism in Clostridioides (Clostridium) difficile 630 Δerm.

Authors:  Amanda N Shelton; Xun Lyu; Michiko E Taga
Journal:  J Bacteriol       Date:  2020-01-02       Impact factor: 3.490

Review 7.  Vitamin B12 as a modulator of gut microbial ecology.

Authors:  Patrick H Degnan; Michiko E Taga; Andrew L Goodman
Journal:  Cell Metab       Date:  2014-11-04       Impact factor: 27.287

Review 8.  Multi-faceted approaches to discovering and predicting microbial nutritional interactions.

Authors:  Sebastian Gude; Michiko E Taga
Journal:  Curr Opin Biotechnol       Date:  2019-10-06       Impact factor: 9.740

9.  Human gut microbes use multiple transporters to distinguish vitamin B₁₂ analogs and compete in the gut.

Authors:  Patrick H Degnan; Natasha A Barry; Kenny C Mok; Michiko E Taga; Andrew L Goodman
Journal:  Cell Host Microbe       Date:  2014-01-15       Impact factor: 21.023

10.  Versatility in corrinoid salvaging and remodeling pathways supports corrinoid-dependent metabolism in Dehalococcoides mccartyi.

Authors:  Shan Yi; Erica C Seth; Yu-Jie Men; Sally P Stabler; Robert H Allen; Lisa Alvarez-Cohen; Michiko E Taga
Journal:  Appl Environ Microbiol       Date:  2012-08-24       Impact factor: 4.792

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