Literature DB >> 19875082

Identification of distinct thiopeptide-antibiotic precursor lead compounds using translation machinery assays.

Agata L Starosta1, Haiou Qin, Aleksandra Mikolajka, Gulice Y C Leung, Kathrin Schwinghammer, Kyriacos C Nicolaou, David Y-K Chen, Barry S Cooperman, Daniel N Wilson.   

Abstract

Most thiopeptide antibiotics target the translational machinery: thiostrepton (ThS) and nosiheptide (NoS) target the ribosome and inhibit translation factor function, whereas GE2270A/T binds to the elongation factor EF-Tu and prevents ternary complex formation. We have used several in vitro translational machinery assays to screen a library of thiopeptide antibiotic precursor compounds and identified four families of precursor compounds that are either themselves inhibitory or are able to relieve the inhibitory effects of ThS, NoS, or GE2270T. Some of these precursors represent distinct compounds with respect to their ability to bind to ribosomes. The results not only provide insight into the mechanism of action of thiopeptide compounds but also demonstrate the potential of such assays for identifying lead compounds that might be missed using conventional inhibitory screening protocols.

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Year:  2009        PMID: 19875082      PMCID: PMC3117328          DOI: 10.1016/j.chembiol.2009.09.016

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  41 in total

1.  Inhibition by thiostrepton of the formation of a ribosome-bound guanine nucleotide complex.

Authors:  B Weisblum; V Demohn
Journal:  FEBS Lett       Date:  1970-12       Impact factor: 4.124

Review 2.  Ribosomal proteins in the spotlight.

Authors:  Daniel N Wilson; Knud H Nierhaus
Journal:  Crit Rev Biochem Mol Biol       Date:  2005 Sep-Oct       Impact factor: 8.250

3.  Thiostrepton inhibition of tRNA delivery to the ribosome.

Authors:  Ruben L Gonzalez; Steven Chu; Joseph D Puglisi
Journal:  RNA       Date:  2007-10-19       Impact factor: 4.942

4.  EF-G-dependent GTPase on the ribosome. conformational change and fusidic acid inhibition.

Authors:  Hyuk-Soo Seo; Sameem Abedin; Detlev Kamp; Daniel N Wilson; Knud H Nierhaus; Barry S Cooperman
Journal:  Biochemistry       Date:  2006-02-28       Impact factor: 3.162

Review 5.  From amino acids to heteroaromatics--thiopeptide antibiotics, nature's heterocyclic peptides.

Authors:  Rachael A Hughes; Christopher J Moody
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

6.  Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.

Authors:  Daqi Tu; Gregor Blaha; Peter B Moore; Thomas A Steitz
Journal:  Cell       Date:  2005-04-22       Impact factor: 41.582

7.  Selection of small peptides, inhibitors of translation.

Authors:  Beatriz Llano-Sotelo; Dorota Klepacki; Alexander S Mankin
Journal:  J Mol Biol       Date:  2009-07-02       Impact factor: 5.469

8.  The roles of initiation factor 2 and guanosine triphosphate in initiation of protein synthesis.

Authors:  Ayman Antoun; Michael Y Pavlov; Kerstin Andersson; Tanel Tenson; Måns Ehrenberg
Journal:  EMBO J       Date:  2003-10-15       Impact factor: 11.598

9.  Inhibition by siomycin and thiostrepton of both aminoacyl-tRNA and factor G binding to ribosomes.

Authors:  J Modolell; B Cabrer; A Parmeggiani; D Vazquez
Journal:  Proc Natl Acad Sci U S A       Date:  1971-08       Impact factor: 11.205

10.  The translation initiation functions of IF2: targets for thiostrepton inhibition.

Authors:  Letizia Brandi; Stefano Marzi; Attilio Fabbretti; Carola Fleischer; Walter E Hill; Claudio O Gualerzi; J Stephen Lodmell
Journal:  J Mol Biol       Date:  2004-01-23       Impact factor: 5.469

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  12 in total

1.  Manipulation of thiocillin variants by prepeptide gene replacement: structure, conformation, and activity of heterocycle substitution mutants.

Authors:  Albert A Bowers; Michael G Acker; Alexander Koglin; Christopher T Walsh
Journal:  J Am Chem Soc       Date:  2010-06-02       Impact factor: 15.419

2.  Elongation factor G is a critical target during oxidative damage to the translation system of Escherichia coli.

Authors:  Takanori Nagano; Kouji Kojima; Toru Hisabori; Hidenori Hayashi; Eugene Hayato Morita; Takashi Kanamori; Tomoko Miyagi; Takuya Ueda; Yoshitaka Nishiyama
Journal:  J Biol Chem       Date:  2012-07-06       Impact factor: 5.157

3.  Cryo-EM structure of the tetracycline resistance protein TetM in complex with a translating ribosome at 3.9-Å resolution.

Authors:  Stefan Arenz; Fabian Nguyen; Roland Beckmann; Daniel N Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-13       Impact factor: 11.205

4.  Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis.

Authors:  Lasse Jenner; Agata L Starosta; Daniel S Terry; Aleksandra Mikolajka; Liudmila Filonava; Marat Yusupov; Scott C Blanchard; Daniel N Wilson; Gulnara Yusupova
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-19       Impact factor: 11.205

Review 5.  Thiazolyl peptide antibiotic biosynthesis: a cascade of post-translational modifications on ribosomal nascent proteins.

Authors:  Christopher T Walsh; Michael G Acker; Albert A Bowers
Journal:  J Biol Chem       Date:  2010-06-03       Impact factor: 5.157

6.  Structure-activity relationships of thiostrepton derivatives: implications for rational drug design.

Authors:  Antje Wolf; Sebastian Schoof; Sascha Baumann; Hans-Dieter Arndt; Karl N Kirschner
Journal:  J Comput Aided Mol Des       Date:  2014-10-04       Impact factor: 3.686

7.  Differential effects of thiopeptide and orthosomycin antibiotics on translational GTPases.

Authors:  Aleksandra Mikolajka; Hanqing Liu; Yuanwei Chen; Agata L Starosta; Viter Márquez; Marina Ivanova; Barry S Cooperman; Daniel N Wilson
Journal:  Chem Biol       Date:  2011-05-27

Review 8.  The bacterial translation stress response.

Authors:  Agata L Starosta; Jürgen Lassak; Kirsten Jung; Daniel N Wilson
Journal:  FEMS Microbiol Rev       Date:  2014-09-26       Impact factor: 16.408

9.  Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A.

Authors:  Yury S Polikanov; Agata L Starosta; Manuel F Juette; Roger B Altman; Daniel S Terry; Wanli Lu; Benjamin J Burnett; George Dinos; Kevin A Reynolds; Scott C Blanchard; Thomas A Steitz; Daniel N Wilson
Journal:  Mol Cell       Date:  2015-05-28       Impact factor: 17.970

10.  Structural basis and dynamics of multidrug recognition in a minimal bacterial multidrug resistance system.

Authors:  Judith Habazettl; Martin Allan; Pernille Rose Jensen; Hans-Jürgen Sass; Charles J Thompson; Stephan Grzesiek
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-08       Impact factor: 11.205

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