Literature DB >> 19857985

Light activation as a method of regulating and studying gene expression.

Alexander Deiters1.   

Abstract

Recently, several advances have been made in the activation and deactivation of gene expression using light. These developments are based on the application of small molecule inducers of gene expression, antisense- or RNA interference-mediated gene silencing, and the photochemical control of proteins regulating gene function. The majority of the examples employ a classical 'caging technology', through the chemical installation of a light-removable protecting group on the biological molecule (small molecule, oligonucleotide, or protein) of interest and rendering it inactive. UV light irradiation then removes the caging group and activates the molecule, enabling control over gene activity with high spatial and temporal resolution.

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Year:  2009        PMID: 19857985      PMCID: PMC2787999          DOI: 10.1016/j.cbpa.2009.09.026

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  41 in total

Review 1.  Biologically active molecules with a "light switch".

Authors:  Günter Mayer; Alexander Heckel
Journal:  Angew Chem Int Ed Engl       Date:  2006-07-24       Impact factor: 15.336

Review 2.  Photochemical control of biological processes.

Authors:  Douglas D Young; Alexander Deiters
Journal:  Org Biomol Chem       Date:  2006-12-20       Impact factor: 3.876

3.  Photochemical activation of protein expression in bacterial cells.

Authors:  Douglas D Young; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  Light-dependent RNA interference with nucleobase-caged siRNAs.

Authors:  Vera Mikat; Alexander Heckel
Journal:  RNA       Date:  2007-10-19       Impact factor: 4.942

5.  A genetically encoded photocaged tyrosine.

Authors:  Alexander Deiters; Dan Groff; Youngha Ryu; Jianming Xie; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2006-04-21       Impact factor: 15.336

6.  Light-controlled gene silencing in zebrafish embryos.

Authors:  Ilya A Shestopalov; Surajit Sinha; James K Chen
Journal:  Nat Chem Biol       Date:  2007-08-23       Impact factor: 15.040

7.  Regulating gene expression in zebrafish embryos using light-activated, negatively charged peptide nucleic acids.

Authors:  XinJing Tang; Shingo Maegawa; Eric S Weinberg; Ivan J Dmochowski
Journal:  J Am Chem Soc       Date:  2007-08-21       Impact factor: 15.419

8.  Control of protein phosphorylation with a genetically encoded photocaged amino acid.

Authors:  Edward A Lemke; Daniel Summerer; Bernhard H Geierstanger; Scott M Brittain; Peter G Schultz
Journal:  Nat Chem Biol       Date:  2007-10-28       Impact factor: 15.040

9.  Photoinduced RNA interference using DMNPE-caged 2'-deoxy-2'-fluoro substituted nucleic acids in vitro and in vivo.

Authors:  Richard A Blidner; Kurt R Svoboda; Robert P Hammer; W Todd Monroe
Journal:  Mol Biosyst       Date:  2008-03-31

10.  Regulating gene expression in human leukemia cells using light-activated oligodeoxynucleotides.

Authors:  XinJing Tang; Jyothishmathi Swaminathan; Alan M Gewirtz; Ivan J Dmochowski
Journal:  Nucleic Acids Res       Date:  2007-12-01       Impact factor: 16.971

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  42 in total

1.  Controlling the Oligomerization State of Aβ-Derived Peptides with Light.

Authors:  Patrick J Salveson; Sepehr Haerianardakani; Alexander Thuy-Boun; Adam G Kreutzer; James S Nowick
Journal:  J Am Chem Soc       Date:  2018-04-20       Impact factor: 15.419

Review 2.  Photoremovable protecting groups in chemistry and biology: reaction mechanisms and efficacy.

Authors:  Petr Klán; Tomáš Šolomek; Christian G Bochet; Aurélien Blanc; Richard Givens; Marina Rubina; Vladimir Popik; Alexey Kostikov; Jakob Wirz
Journal:  Chem Rev       Date:  2012-12-21       Impact factor: 60.622

3.  Light-activated gene editing with a photocaged zinc-finger nuclease.

Authors:  Chungjung Chou; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2011-06-10       Impact factor: 15.336

4.  Simple alkanoyl acylating agents for reversible RNA functionalization and control.

Authors:  Hyun Shin Park; Anna M Kietrys; Eric T Kool
Journal:  Chem Commun (Camb)       Date:  2019-04-25       Impact factor: 6.222

5.  Synthesis and incorporation of a caged tyrosine amino acid possessing a bioorthogonal handle.

Authors:  Marshall S Padilla; Christopher A Farley; Lindsay E Chatkewitz; Douglas D Young
Journal:  Tetrahedron Lett       Date:  2016-09-10       Impact factor: 2.415

6.  Photochemical control of DNA decoy function enables precise regulation of nuclear factor κB activity.

Authors:  Jeane M Govan; Mark O Lively; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2011-07-29       Impact factor: 15.419

7.  Activation and deactivation of DNAzyme and antisense function with light for the photochemical regulation of gene expression in mammalian cells.

Authors:  Douglas D Young; Mark O Lively; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

8.  Light-Controlled Cell Factories: Employing Photocaged Isopropyl-β-d-Thiogalactopyranoside for Light-Mediated Optimization of lac Promoter-Based Gene Expression and (+)-Valencene Biosynthesis in Corynebacterium glutamicum.

Authors:  Dennis Binder; Jonas Frohwitter; Regina Mahr; Claus Bier; Alexander Grünberger; Anita Loeschcke; Petra Peters-Wendisch; Dietrich Kohlheyer; Jörg Pietruszka; Julia Frunzke; Karl-Erich Jaeger; Volker F Wendisch; Thomas Drepper
Journal:  Appl Environ Microbiol       Date:  2016-09-30       Impact factor: 4.792

9.  A Cyanine Photooxidation/β-Elimination Sequence Enables Near-infrared Uncaging of Aryl Amine Payloads.

Authors:  Tsuyoshi Yamamoto; Donald R Caldwell; Albert Gandioso; Martin J Schnermann
Journal:  Photochem Photobiol       Date:  2019-03-19       Impact factor: 3.421

10.  RNA Cloaking by Reversible Acylation.

Authors:  Anastasia Kadina; Anna M Kietrys; Eric T Kool
Journal:  Angew Chem Int Ed Engl       Date:  2018-02-22       Impact factor: 15.336

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