Literature DB >> 19855395

Involvement of a chromatin remodeling complex in damage tolerance during DNA replication.

Karina B Falbo1, Constance Alabert, Yuki Katou, Su Wu, Junhong Han, Tammy Wehr, Jing Xiao, Xiangwei He, Zhiguo Zhang, Yang Shi, Katsu Shirahige, Philippe Pasero, Xuetong Shen.   

Abstract

ATP-dependent chromatin remodeling complexes have been shown to participate in DNA replication in addition to transcription and DNA repair. However, the mechanisms of their involvement in DNA replication remain unclear. Here, we reveal a specific function of the yeast INO80 chromatin remodeling complex in the DNA damage tolerance pathways. Whereas INO80 is necessary for the resumption of replication at forks stalled by methyl methane sulfonate (MMS), it is not required for replication fork collapse after treatment with hydroxyurea (HU). Mechanistically, INO80 regulates DNA damage tolerance during replication through modulation of PCNA (proliferating cell nuclear antigen) ubiquitination and Rad51-mediated processing of recombination intermediates at impeded replication forks. Our findings establish a mechanistic link between INO80 and DNA damage tolerance pathways, indicating that chromatin remodeling is important for accurate DNA replication.

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Year:  2009        PMID: 19855395      PMCID: PMC2974178          DOI: 10.1038/nsmb.1686

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  34 in total

1.  Dynamic molecular combing: stretching the whole human genome for high-resolution studies.

Authors:  X Michalet; R Ekong; F Fougerousse; S Rousseaux; C Schurra; N Hornigold; M van Slegtenhorst; J Wolfe; S Povey; J S Beckmann; A Bensimon
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

2.  In vivo assays to study histone ubiquitylation.

Authors:  Cheng-Fu Kao; Mary Ann Osley
Journal:  Methods       Date:  2003-09       Impact factor: 3.608

3.  RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO.

Authors:  Carsten Hoege; Boris Pfander; George-Lucian Moldovan; George Pyrowolakis; Stefan Jentsch
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

4.  S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex.

Authors:  Yuki Katou; Yutaka Kanoh; Masashige Bando; Hideki Noguchi; Hirokazu Tanaka; Toshihiko Ashikari; Katsunori Sugimoto; Katsuhiko Shirahige
Journal:  Nature       Date:  2003-08-28       Impact factor: 49.962

5.  A genome-wide screen for methyl methanesulfonate-sensitive mutants reveals genes required for S phase progression in the presence of DNA damage.

Authors:  Michael Chang; Mohammed Bellaoui; Charles Boone; Grant W Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-13       Impact factor: 11.205

6.  A chromatin remodelling complex involved in transcription and DNA processing.

Authors:  X Shen; G Mizuguchi; A Hamiche; C Wu
Journal:  Nature       Date:  2000-08-03       Impact factor: 49.962

7.  Involvement of actin-related proteins in ATP-dependent chromatin remodeling.

Authors:  Xuetong Shen; Ryan Ranallo; Eugene Choi; Carl Wu
Journal:  Mol Cell       Date:  2003-07       Impact factor: 17.970

8.  SUMOylation regulates Rad18-mediated template switch.

Authors:  Dana Branzei; Fabio Vanoli; Marco Foiani
Journal:  Nature       Date:  2008-12-18       Impact factor: 49.962

9.  Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation.

Authors:  Philipp Stelter; Helle D Ulrich
Journal:  Nature       Date:  2003-09-11       Impact factor: 49.962

10.  The DNA replication checkpoint response stabilizes stalled replication forks.

Authors:  M Lopes; C Cotta-Ramusino; A Pellicioli; G Liberi; P Plevani; M Muzi-Falconi; C S Newlon; M Foiani
Journal:  Nature       Date:  2001-08-02       Impact factor: 49.962

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  52 in total

1.  ATP-dependent chromatin remodeling factors tune S phase checkpoint activity.

Authors:  Tracey J Au; Jairo Rodriguez; Jack A Vincent; Toshio Tsukiyama
Journal:  Mol Cell Biol       Date:  2011-09-19       Impact factor: 4.272

Review 2.  Chromatin replication and epigenome maintenance.

Authors:  Constance Alabert; Anja Groth
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-23       Impact factor: 94.444

3.  Mechanism of DNA damage tolerance.

Authors:  Xin Bi
Journal:  World J Biol Chem       Date:  2015-08-26

4.  The INO80 Complex Requires the Arp5-Ies6 Subcomplex for Chromatin Remodeling and Metabolic Regulation.

Authors:  Wei Yao; Devin A King; Sean L Beckwith; Graeme J Gowans; Kuangyu Yen; Coral Zhou; Ashby J Morrison
Journal:  Mol Cell Biol       Date:  2016-01-11       Impact factor: 4.272

Review 5.  Actin-related proteins localized in the nucleus: from discovery to novel roles in nuclear organization.

Authors:  Yukako Oma; Masahiko Harata
Journal:  Nucleus       Date:  2011 Jan-Feb       Impact factor: 4.197

Review 6.  Maintaining genome stability at the replication fork.

Authors:  Dana Branzei; Marco Foiani
Journal:  Nat Rev Mol Cell Biol       Date:  2010-03       Impact factor: 94.444

7.  The NuA4 complex promotes translesion synthesis (TLS)-mediated DNA damage tolerance.

Authors:  Margaret Renaud-Young; David C Lloyd; Kate Chatfield-Reed; Iain George; Gordon Chua; Jennifer Cobb
Journal:  Genetics       Date:  2015-02-19       Impact factor: 4.562

8.  Alpha thalassemia/mental retardation syndrome X-linked gene product ATRX is required for proper replication restart and cellular resistance to replication stress.

Authors:  Justin Wai-Chung Leung; Gargi Ghosal; Wenqi Wang; Xi Shen; Jiadong Wang; Lei Li; Junjie Chen
Journal:  J Biol Chem       Date:  2013-01-16       Impact factor: 5.157

Review 9.  Chromatin and the genome integrity network.

Authors:  Manolis Papamichos-Chronakis; Craig L Peterson
Journal:  Nat Rev Genet       Date:  2013-01       Impact factor: 53.242

10.  Transcriptional repressor ZBTB1 promotes chromatin remodeling and translesion DNA synthesis.

Authors:  Hyungjin Kim; Donniphat Dejsuphong; Guillaume Adelmant; Raphael Ceccaldi; Kailin Yang; Jarrod A Marto; Alan D D'Andrea
Journal:  Mol Cell       Date:  2014-03-20       Impact factor: 17.970

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