Literature DB >> 19835886

Structure of the small outer capsid protein, Soc: a clamp for stabilizing capsids of T4-like phages.

Li Qin1, Andrei Fokine, Erin O'Donnell, Venigalla B Rao, Michael G Rossmann.   

Abstract

Many viruses need to stabilize their capsid structure against DNA pressure and for survival in hostile environments. The 9-kDa outer capsid protein (Soc) of bacteriophage T4, which stabilizes the virus, attaches to the capsid during the final stage of maturation. There are 870 Soc molecules that act as a "glue" between neighboring hexameric capsomers, forming a "cage" that stabilizes the T4 capsid against extremes of pH and temperature. Here we report a 1.9 A resolution crystal structure of Soc from the bacteriophage RB69, a close relative of T4. The RB69 crystal structure and a homology model of T4 Soc were fitted into the cryoelectron microscopy reconstruction of the T4 capsid. This established the region of Soc that interacts with the major capsid protein and suggested a mechanism, verified by extensive mutational and biochemical studies, for stabilization of the capsid in which the Soc trimers act as clamps between neighboring capsomers. The results demonstrate the factors involved in stabilizing not only the capsids of T4-like bacteriophages but also many other virus capsids.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19835886      PMCID: PMC2813359          DOI: 10.1016/j.jmb.2009.10.007

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  48 in total

1.  Roles of triplex and scaffolding proteins in herpes simplex virus type 1 capsid formation suggested by structures of recombinant particles.

Authors:  A Saad; Z H Zhou; J Jakana; W Chiu; F J Rixon
Journal:  J Virol       Date:  1999-08       Impact factor: 5.103

2.  Molecular architecture of bacteriophage T4 capsid: vertex structure and bimodal binding of the stabilizing accessory protein, Soc.

Authors:  K Iwasaki; B L Trus; P T Wingfield; N Cheng; G Campusano; V B Rao; A C Steven
Journal:  Virology       Date:  2000-06-05       Impact factor: 3.616

3.  Situs: A package for docking crystal structures into low-resolution maps from electron microscopy.

Authors:  W Wriggers; R A Milligan; J A McCammon
Journal:  J Struct Biol       Date:  1999 Apr-May       Impact factor: 2.867

4.  The N-terminal ATPase site in the large terminase protein gp17 is critically required for DNA packaging in bacteriophage T4.

Authors:  V B Rao; M S Mitchell
Journal:  J Mol Biol       Date:  2001-11-30       Impact factor: 5.469

5.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

6.  Fitting atomic models into electron-microscopy maps.

Authors:  M G Rossmann
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-10

7.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

8.  The bacteriophage straight phi29 portal motor can package DNA against a large internal force.

Authors:  D E Smith; S J Tans; S B Smith; S Grimes; D L Anderson; C Bustamante
Journal:  Nature       Date:  2001-10-18       Impact factor: 49.962

9.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

10.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
View more
  46 in total

1.  Structure of the three N-terminal immunoglobulin domains of the highly immunogenic outer capsid protein from a T4-like bacteriophage.

Authors:  Andrei Fokine; Mohammad Z Islam; Zhihong Zhang; Valorie D Bowman; Venigalla B Rao; Michael G Rossmann
Journal:  J Virol       Date:  2011-06-01       Impact factor: 5.103

2.  CryoEM and mutagenesis reveal that the smallest capsid protein cements and stabilizes Kaposi's sarcoma-associated herpesvirus capsid.

Authors:  Xinghong Dai; Danyang Gong; Yuchen Xiao; Ting-Ting Wu; Ren Sun; Z Hong Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

3.  Structure of bacteriophage phi29 head fibers has a supercoiled triple repeating helix-turn-helix motif.

Authors:  Ye Xiang; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

Review 4.  The DNA-packaging nanomotor of tailed bacteriophages.

Authors:  Sherwood R Casjens
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

5.  Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.

Authors:  Fei Guo; Zheng Liu; Ping-An Fang; Qinfen Zhang; Elena T Wright; Weimin Wu; Ci Zhang; Frank Vago; Yue Ren; Joanita Jakana; Wah Chiu; Philip Serwer; Wen Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

Review 6.  Structure, assembly, and DNA packaging of the bacteriophage T4 head.

Authors:  Lindsay W Black; Venigalla B Rao
Journal:  Adv Virus Res       Date:  2012       Impact factor: 9.937

7.  Common Evolutionary Origin of Procapsid Proteases, Phage Tail Tubes, and Tubes of Bacterial Type VI Secretion Systems.

Authors:  Andrei Fokine; Michael G Rossmann
Journal:  Structure       Date:  2016-09-22       Impact factor: 5.006

8.  Engineering Biorthogonal Phage-Based Nanobots for Ultrasensitive, In Situ Bacteria Detection.

Authors:  Hannah S Zurier; Michelle M Duong; Julie M Goddard; Sam R Nugen
Journal:  ACS Appl Bio Mater       Date:  2020-06-23

9.  In vitro and in vivo delivery of genes and proteins using the bacteriophage T4 DNA packaging machine.

Authors:  Pan Tao; Marthandan Mahalingam; Bernard S Marasa; Zhihong Zhang; Ashok K Chopra; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

10.  Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.

Authors:  Jiří Nováček; Marta Šiborová; Martin Benešík; Roman Pantůček; Jiří Doškař; Pavel Plevka
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-28       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.