Literature DB >> 21632759

Structure of the three N-terminal immunoglobulin domains of the highly immunogenic outer capsid protein from a T4-like bacteriophage.

Andrei Fokine1, Mohammad Z Islam, Zhihong Zhang, Valorie D Bowman, Venigalla B Rao, Michael G Rossmann.   

Abstract

The head of bacteriophage T4 is decorated with 155 copies of the highly antigenic outer capsid protein (Hoc). One Hoc molecule binds near the center of each hexameric capsomer. Hoc is dispensable for capsid assembly and has been used to display pathogenic antigens on the surface of T4. Here we report the crystal structure of a protein containing the first three of four domains of Hoc from bacteriophage RB49, a close relative of T4. The structure shows an approximately linear arrangement of the protein domains. Each of these domains has an immunoglobulin-like fold, frequently found in cell attachment molecules. In addition, we report biochemical data suggesting that Hoc can bind to Escherichia coli, supporting the hypothesis that Hoc could attach the phage capsids to bacterial surfaces and perhaps also to other organisms. The capacity for such reversible adhesion probably provides survival advantages to the bacteriophage.

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Year:  2011        PMID: 21632759      PMCID: PMC3147960          DOI: 10.1128/JVI.00847-11

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  48 in total

1.  Molecular architecture of bacteriophage T4 capsid: vertex structure and bimodal binding of the stabilizing accessory protein, Soc.

Authors:  K Iwasaki; B L Trus; P T Wingfield; N Cheng; G Campusano; V B Rao; A C Steven
Journal:  Virology       Date:  2000-06-05       Impact factor: 3.616

2.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

3.  Crystal structure of the human leukocyte Fc receptor, Fc gammaRIIa.

Authors:  K F Maxwell; M S Powell; M D Hulett; P A Barton; I F McKenzie; T P Garrett; P M Hogarth
Journal:  Nat Struct Biol       Date:  1999-05

4.  Structural basis of cell-cell adhesion by NCAM.

Authors:  C Kasper; H Rasmussen; J S Kastrup; S Ikemizu; E Y Jones; V Berezin; E Bock; I K Larsen
Journal:  Nat Struct Biol       Date:  2000-05

5.  Structural basis for the high-affinity interaction of nidogen-1 with immunoglobulin-like domain 3 of perlecan.

Authors:  M Kvansakul; M Hopf; A Ries; R Timpl; E Hohenester
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

6.  Archaeal surface layer proteins contain beta propeller, PKD, and beta helix domains and are related to metazoan cell surface proteins.

Authors:  Hua Jing; Junichi Takagi; Jin-huan Liu; Sara Lindgren; Rong-guang Zhang; A Joachimiak; Jia-huai Wang; Timothy A Springer
Journal:  Structure       Date:  2002-10       Impact factor: 5.006

7.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

8.  Conformational changes of a viral capsid protein. Thermodynamic rationale for proteolytic regulation of bacteriophage T4 capsid expansion, co-operativity, and super-stabilization by soc binding.

Authors:  A C Steven; H L Greenstone; F P Booy; L W Black; P D Ross
Journal:  J Mol Biol       Date:  1992-12-05       Impact factor: 5.469

Review 9.  Structure and morphogenesis of bacteriophage T4.

Authors:  P G Leiman; S Kanamaru; V V Mesyanzhinov; F Arisaka; M G Rossmann
Journal:  Cell Mol Life Sci       Date:  2003-11       Impact factor: 9.261

10.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
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  32 in total

1.  Capsomer dynamics and stabilization in the T = 12 marine bacteriophage SIO-2 and its procapsid studied by CryoEM.

Authors:  Gabriel C Lander; Anne-Claire Baudoux; Farooq Azam; Clinton S Potter; Bridget Carragher; John E Johnson
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

2.  Hypervariable loci in the human gut virome.

Authors:  Samuel Minot; Stephanie Grunberg; Gary D Wu; James D Lewis; Frederic D Bushman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

3.  Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters.

Authors:  Jeremy J Barr; Rita Auro; Nicholas Sam-Soon; Sam Kassegne; Gregory Peters; Natasha Bonilla; Mark Hatay; Sarah Mourtada; Barbara Bailey; Merry Youle; Ben Felts; Arlette Baljon; Jim Nulton; Peter Salamon; Forest Rohwer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-19       Impact factor: 11.205

4.  Deletion of the Hoc and Soc capsid proteins affects the surface and cellular uptake properties of bacteriophage T4 derived nanoparticles.

Authors:  Kelly Robertson; Yoko Furukawa; Alison Underwood; Lindsay Black; Jinny L Liu
Journal:  Biochem Biophys Res Commun       Date:  2012-01-21       Impact factor: 3.575

Review 5.  Structure, assembly, and DNA packaging of the bacteriophage T4 head.

Authors:  Lindsay W Black; Venigalla B Rao
Journal:  Adv Virus Res       Date:  2012       Impact factor: 9.937

Review 6.  Molecular architecture of tailed double-stranded DNA phages.

Authors:  Andrei Fokine; Michael G Rossmann
Journal:  Bacteriophage       Date:  2014-02-21

7.  Cryo-EM structure of the bacteriophage T4 isometric head at 3.3-Å resolution and its relevance to the assembly of icosahedral viruses.

Authors:  Zhenguo Chen; Lei Sun; Zhihong Zhang; Andrei Fokine; Victor Padilla-Sanchez; Dorit Hanein; Wen Jiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

8.  Common Evolutionary Origin of Procapsid Proteases, Phage Tail Tubes, and Tubes of Bacterial Type VI Secretion Systems.

Authors:  Andrei Fokine; Michael G Rossmann
Journal:  Structure       Date:  2016-09-22       Impact factor: 5.006

9.  In vitro and in vivo delivery of genes and proteins using the bacteriophage T4 DNA packaging machine.

Authors:  Pan Tao; Marthandan Mahalingam; Bernard S Marasa; Zhihong Zhang; Ashok K Chopra; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

Review 10.  Bacteriophages and phage-inspired nanocarriers for targeted delivery of therapeutic cargos.

Authors:  Mahdi Karimi; Hamed Mirshekari; Seyed Masoud Moosavi Basri; Sajad Bahrami; Mohsen Moghoofei; Michael R Hamblin
Journal:  Adv Drug Deliv Rev       Date:  2016-03-17       Impact factor: 15.470

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