Literature DB >> 19823693

Hardware-based anti-Brownian electrokinetic trap (ABEL trap) for single molecules: Control loop simulations and application to ATP binding stoichiometry in multi-subunit enzymes.

Yan Jiang1, Quan Wang, Adam E Cohen, Nick Douglas, Judith Frydman, W E Moerner.   

Abstract

The hardware-based Anti-Brownian ELectrokinetic trap (ABEL trap) features a feedback latency as short as 25 µs, suitable for trapping single protein molecules in aqueous solution. The performance of the feedback control loop is analyzed to extract estimates of the position variance for various controller designs. Preliminary data are presented in which the trap is applied to the problem of determining the distribution of numbers of ATP bound for single chaperonin multi-subunit enzymes.

Entities:  

Year:  2008        PMID: 19823693      PMCID: PMC2759103          DOI: 10.1117/12.798093

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  13 in total

1.  Analysis of interaction between chaperonin GroEL and its substrate using fluorescence correlation spectroscopy.

Authors:  C G Pack; G Nishimura; M Tamura; K Aoki; H Taguchi; M Yoshida; M Kinjo
Journal:  Cytometry       Date:  1999-07-01

2.  Quantitative characterization of changes in dynamical behavior for single-particle tracking studies.

Authors:  D Montiel; H Cang; H Yang
Journal:  J Phys Chem B       Date:  2006-10-12       Impact factor: 2.991

3.  Single-molecule mountains yield nanoscale cell images.

Authors:  W E Moerner
Journal:  Nat Methods       Date:  2006-10       Impact factor: 28.547

4.  Subunit counting in membrane-bound proteins.

Authors:  Maximilian H Ulbrich; Ehud Y Isacoff
Journal:  Nat Methods       Date:  2007-03-18       Impact factor: 28.547

5.  Suppressing Brownian motion of individual biomolecules in solution.

Authors:  Adam E Cohen; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

6.  Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins.

Authors:  Stefanie Reissmann; Charles Parnot; Christopher R Booth; Wah Chiu; Judith Frydman
Journal:  Nat Struct Mol Biol       Date:  2007-04-29       Impact factor: 15.369

7.  Controlling Brownian motion of single protein molecules and single fluorophores in aqueous buffer.

Authors:  Adam E Cohen; W E Moerner
Journal:  Opt Express       Date:  2008-05-12       Impact factor: 3.894

8.  Fluctuations in closed-loop fluorescent particle tracking.

Authors:  Andrew J Berglund; Kevin McHale; Hideo Mabuchi
Journal:  Opt Express       Date:  2007-06-11       Impact factor: 3.894

9.  Counting of six pRNAs of phi29 DNA-packaging motor with customized single-molecule dual-view system.

Authors:  Dan Shu; Hui Zhang; Jiashun Jin; Peixuan Guo
Journal:  EMBO J       Date:  2007-01-24       Impact factor: 11.598

Review 10.  Review: allostery in chaperonins.

Authors:  A Horovitz; Y Fridmann; G Kafri; O Yifrach
Journal:  J Struct Biol       Date:  2001-08       Impact factor: 2.867

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  6 in total

1.  A method for removing effects of nonspecific binding on the distribution of binding stoichiometries: application to mass spectroscopy data.

Authors:  Liat Shimon; Michal Sharon; Amnon Horovitz
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

2.  Optimal strategy for trapping single fluorescent molecules in solution using the ABEL trap.

Authors:  Q Wang; W E Moerner
Journal:  Appl Phys B       Date:  2010-04-01       Impact factor: 2.070

3.  Electrokinetic trapping at the one nanometer limit.

Authors:  Alexander P Fields; Adam E Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-11       Impact factor: 11.205

4.  Measurement of Mesoscale Conformational Dynamics of Freely Diffusing Molecules with Tracking FCS.

Authors:  Charles Limouse; Jason C Bell; Colin J Fuller; Aaron F Straight; Hideo Mabuchi
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

5.  Conformational dynamics of single G protein-coupled receptors in solution.

Authors:  Samuel Bockenhauer; Alexandre Fürstenberg; Xiao Jie Yao; Brian K Kobilka; W E Moerner
Journal:  J Phys Chem B       Date:  2011-10-21       Impact factor: 2.991

Review 6.  Structural Asymmetry and Kinetic Limping of Single Rotary F-ATP Synthases.

Authors:  Hendrik Sielaff; Seiga Yanagisawa; Wayne D Frasch; Wolfgang Junge; Michael Börsch
Journal:  Molecules       Date:  2019-01-30       Impact factor: 4.411

  6 in total

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