Literature DB >> 19805311

Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells.

Maria Valencia-Burton1, Ankita Shah, Jason Sutin, Azra Borogovac, Ron M McCullough, Charles R Cantor, Amit Meller, Natalia E Broude.   

Abstract

Bacteria have a complex internal organization with specific localization of many proteins and DNA, which dynamically move during the cell cycle and in response to changing environmental stimuli. Much less is known, however, about the localization and movements of RNA molecules. By modifying our previous RNA labeling system, we monitor the expression and localization of a model RNA transcript in live Escherichia coli cells. Our results reveal that the target RNA is not evenly distributed within the cell and localizes laterally along the long cell axis, in a pattern suggesting the existence of ordered helical RNA structures reminiscent of known bacterial cytoskeletal cellular elements.

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Year:  2009        PMID: 19805311      PMCID: PMC2752509          DOI: 10.1073/pnas.0907495106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Control of cell shape in bacteria: helical, actin-like filaments in Bacillus subtilis.

Authors:  L J Jones; R Carballido-López; J Errington
Journal:  Cell       Date:  2001-03-23       Impact factor: 41.582

Review 2.  Dynamic localization of proteins and DNA during a bacterial cell cycle.

Authors:  Rasmus B Jensen; Sherry C Wang; Lucy Shapiro
Journal:  Nat Rev Mol Cell Biol       Date:  2002-03       Impact factor: 94.444

3.  Mechanisms of proinflammatory cytokine-induced biphasic NF-kappaB activation.

Authors:  Christian Schmidt; Bailu Peng; Zhongkui Li; Guido M Sclabas; Shuichi Fujioka; Jiangong Niu; Marc Schmidt-Supprian; Douglas B Evans; James L Abbruzzese; Paul J Chiao
Journal:  Mol Cell       Date:  2003-11       Impact factor: 17.970

4.  Control of cell morphogenesis in bacteria: two distinct ways to make a rod-shaped cell.

Authors:  Richard A Daniel; Jeff Errington
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

5.  Duplication and segregation of the actin (MreB) cytoskeleton during the prokaryotic cell cycle.

Authors:  Purva Vats; Lawrence Rothfield
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-31       Impact factor: 11.205

6.  RNaseE and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome.

Authors:  Aziz Taghbalout; Lawrence Rothfield
Journal:  J Biol Chem       Date:  2008-03-12       Impact factor: 5.157

Review 7.  Cytoskeletal elements in bacteria.

Authors:  Peter L Graumann
Journal:  Annu Rev Microbiol       Date:  2007       Impact factor: 15.500

8.  Compatible bacterial plasmids are targeted to independent cellular locations in Escherichia coli.

Authors:  Thanh Quoc Ho; Zhenping Zhong; Stefan Aung; Joe Pogliano
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

9.  RNA aptamers to initiation factor 4A helicase hinder cap-dependent translation by blocking ATP hydrolysis.

Authors:  Akihiro Oguro; Takashi Ohtsu; Yuri V Svitkin; Nahum Sonenberg; Yoshikazu Nakamura
Journal:  RNA       Date:  2003-04       Impact factor: 4.942

10.  Division site selection in Escherichia coli involves dynamic redistribution of Min proteins within coiled structures that extend between the two cell poles.

Authors:  Yu-Ling Shih; Trung Le; Lawrence Rothfield
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-23       Impact factor: 11.205

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  16 in total

1.  Genetic barcoding with fluorescent proteins for multiplexed applications.

Authors:  Cameron A Smurthwaite; Wesley Williams; Alexandra Fetsko; Darin Abbadessa; Zachary D Stolp; Connor W Reed; Andre Dharmawan; Roland Wolkowicz
Journal:  J Vis Exp       Date:  2015-04-14       Impact factor: 1.355

Review 2.  RNA localization in bacteria.

Authors:  Avi-ad Avraam Buskila; Shanmugapriya Kannaiah; Orna Amster-Choder
Journal:  RNA Biol       Date:  2014-10-31       Impact factor: 4.652

Review 3.  Aptamer-based molecular imaging.

Authors:  Tianjiao Wang; Judhajeet Ray
Journal:  Protein Cell       Date:  2012-09-15       Impact factor: 14.870

Review 4.  RNase E: at the interface of bacterial RNA processing and decay.

Authors:  George A Mackie
Journal:  Nat Rev Microbiol       Date:  2013-01       Impact factor: 60.633

Review 5.  RNA Localization in Bacteria.

Authors:  Jingyi Fei; Cynthia M Sharma
Journal:  Microbiol Spectr       Date:  2018-09

Review 6.  Single molecule fluorescence approaches shed light on intracellular RNAs.

Authors:  Sethuramasundaram Pitchiaya; Laurie A Heinicke; Thomas C Custer; Nils G Walter
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

7.  Labeling native bacterial RNA in live cells.

Authors:  Paul Toran; Irina Smolina; Harry Driscoll; Feng Ding; Yingjie Sun; Charles R Cantor; Natalia E Broude
Journal:  Cell Res       Date:  2014-04-15       Impact factor: 25.617

8.  Localization of the bacterial RNA infrastructure.

Authors:  Kenneth C Keiler
Journal:  Adv Exp Med Biol       Date:  2011       Impact factor: 2.622

9.  Spatial organization of the flow of genetic information in bacteria.

Authors:  Paula Montero Llopis; Audrey F Jackson; Oleksii Sliusarenko; Ivan Surovtsev; Jennifer Heinritz; Thierry Emonet; Christine Jacobs-Wagner
Journal:  Nature       Date:  2010-06-20       Impact factor: 49.962

10.  Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions.

Authors:  Nastaran Hadizadeh Yazdi; Calin C Guet; Reid C Johnson; John F Marko
Journal:  Mol Microbiol       Date:  2012-12       Impact factor: 3.501

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