Literature DB >> 23241849

RNase E: at the interface of bacterial RNA processing and decay.

George A Mackie1.   

Abstract

RNase E is an essential endonuclease that is abundant in many bacteria and plays an important part in all aspects of RNA metabolism. It functions as part of a large macromolecular complex known as the RNA degradosome. Recent evidence suggests that this complex associates with the inner membrane of bacteria, an observation that challenges traditional models in which soluble RNases are proposed to randomly interact with RNAs in the cytosol. In this Review, I summarize the major roles of RNase E in RNA processing and decay and discuss the various mechanisms that regulate its activity. I also propose a new model to rationalize the mechanism of RNase E action in the context of its localization in the bacterial cell.

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Year:  2013        PMID: 23241849     DOI: 10.1038/nrmicro2930

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  131 in total

1.  Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation.

Authors:  Douglas W Selinger; Rini Mukherjee Saxena; Kevin J Cheung; George M Church; Carsten Rosenow
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

2.  Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2.

Authors:  Filipp Frank; Nahum Sonenberg; Bhushan Nagar
Journal:  Nature       Date:  2010-05-26       Impact factor: 49.962

3.  An important role for RNase R in mRNA decay.

Authors:  Zhuan-Fen Cheng; Murray P Deutscher
Journal:  Mol Cell       Date:  2005-01-21       Impact factor: 17.970

4.  Degradation of RNA in Escherichia coli. A hypothesis.

Authors:  D Apirion
Journal:  Mol Gen Genet       Date:  1973-05-28

5.  Exoribonuclease and endoribonuclease activities of RNase BN/RNase Z both function in vivo.

Authors:  Tanmay Dutta; Arun Malhotra; Murray P Deutscher
Journal:  J Biol Chem       Date:  2012-08-14       Impact factor: 5.157

6.  Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing.

Authors:  Bryan W Davies; Caroline Köhrer; Asha I Jacob; Lyle A Simmons; Jianyu Zhu; Lourdes M Aleman; Uttam L Rajbhandary; Graham C Walker
Journal:  Mol Microbiol       Date:  2010-09-16       Impact factor: 3.501

7.  Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis.

Authors:  M P Deutscher; N B Reuven
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-15       Impact factor: 11.205

8.  Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis.

Authors:  X Jiang; A Diwa; J G Belasco
Journal:  J Bacteriol       Date:  2000-05       Impact factor: 3.490

9.  Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli.

Authors:  Dharam Singh; Ssu-Jean Chang; Pei-Hsun Lin; Olga V Averina; Vladimir R Kaberdin; Sue Lin-Chao
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-14       Impact factor: 11.205

10.  The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme.

Authors:  Aleks Schein; Sharon Sheffy-Levin; Fabian Glaser; Gadi Schuster
Journal:  RNA       Date:  2008-04-25       Impact factor: 4.942

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  135 in total

1.  A small RNA activates CFA synthase by isoform-specific mRNA stabilization.

Authors:  Kathrin Sophie Fröhlich; Kai Papenfort; Agnes Fekete; Jörg Vogel
Journal:  EMBO J       Date:  2013-10-18       Impact factor: 11.598

2.  How a CCA sequence protects mature tRNAs and tRNA precursors from action of the processing enzyme RNase BN/RNase Z.

Authors:  Tanmay Dutta; Arun Malhotra; Murray P Deutscher
Journal:  J Biol Chem       Date:  2013-09-10       Impact factor: 5.157

3.  Influence of RNase E deficiency on the production of stx2-bearing phages and Shiga toxin in an RNase E-inducible strain of enterohaemorrhagic Escherichia coli (EHEC) O157:H7.

Authors:  Thujitha Thuraisamy; Patricia B Lodato
Journal:  J Med Microbiol       Date:  2018-04-05       Impact factor: 2.472

Review 4.  How bacterial cells keep ribonucleases under control.

Authors:  Murray P Deutscher
Journal:  FEMS Microbiol Rev       Date:  2015-04-14       Impact factor: 16.408

5.  Silencing of Essential Genes within a Highly Coordinated Operon in Escherichia coli.

Authors:  Shan Goh; Angela Hohmeier; Timothy C Stone; Victoria Offord; Francisco Sarabia; Cristina Garcia-Ruiz; Liam Good
Journal:  Appl Environ Microbiol       Date:  2015-06-12       Impact factor: 4.792

6.  Homeostasis in the Central Dogma of molecular biology: the importance of mRNA instability.

Authors:  José E Pérez-Ortín; Vicente Tordera; Sebastián Chávez
Journal:  RNA Biol       Date:  2019-09-02       Impact factor: 4.652

7.  Processing generates 3' ends of RNA masking transcription termination events in prokaryotes.

Authors:  Xun Wang; Monford Paul Abishek N; Heung Jin Jeon; Yonho Lee; Jin He; Sankar Adhya; Heon M Lim
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-19       Impact factor: 11.205

8.  Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis.

Authors:  Kai Papenfort; Yan Sun; Masatoshi Miyakoshi; Carin K Vanderpool; Jörg Vogel
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

9.  The bacterial endoribonuclease RNase E can cleave RNA in the absence of the RNA chaperone Hfq.

Authors:  Yu Mi Baek; Kyoung-Jin Jang; Hyobeen Lee; Soojin Yoon; Ahruem Baek; Kangseok Lee; Dong-Eun Kim
Journal:  J Biol Chem       Date:  2019-09-20       Impact factor: 5.157

10.  In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria.

Authors:  Anne Plochowietz; Ian Farrell; Zeev Smilansky; Barry S Cooperman; Achillefs N Kapanidis
Journal:  Nucleic Acids Res       Date:  2016-09-12       Impact factor: 16.971

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