Literature DB >> 19805263

Spectroscopic evidence for an engineered, catalytically active Trp radical that creates the unique reactivity of lignin peroxidase.

Andrew T Smith1, Wendy A Doyle, Pierre Dorlet, Anabella Ivancich.   

Abstract

The surface oxidation site (Trp-171) in lignin peroxidase (LiP) required for the reaction with veratryl alcohol a high-redox-potential (1.4 V) substrate, was engineered into Coprinus cinereus peroxidase (CiP) by introducing a Trp residue into a heme peroxidase that has similar protein fold but lacks this activity. To create the catalytic activity toward veratryl alcohol in CiP, it was necessary to reproduce the Trp site and its negatively charged microenvironment by means of a triple mutation. The resulting D179W+R258E+R272D variant was characterized by multifrequency EPR spectroscopy. The spectra unequivocally showed that a new Trp radical [g values of g(x) = 2.0035(5), g(y) = 2.0027(5), and g(z) = 2.0022(1)] was formed after the [Fe(IV)=O Por(*+)] intermediate, as a result of intramolecular electron transfer between Trp-179 and the porphyrin. Also, the EPR characterization crucially showed that [Fe(IV)=O Trp-179(*)] was the reactive intermediate with veratryl alcohol. Accordingly, our work shows that it is necessary to take into account the physicochemical properties of the radical, fine-tuned by the microenvironment, as well as those of the preceding [Fe(IV)=O Por(*+)] intermediate to engineer a catalytically competent Trp site for a given substrate. Manipulation of the microenvironment of the Trp-171 site in LiP allowed the detection by EPR spectroscopy of the Trp-171(*), for which direct evidence has been missing so far. Our work also highlights the role of Trp residues as tunable redox-active cofactors for enzyme catalysis in the context of peroxidases with a unique reactivity toward recalcitrant substrates that require oxidation potentials not realized at the heme site.

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Year:  2009        PMID: 19805263      PMCID: PMC2752603          DOI: 10.1073/pnas.0904535106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Substrate specificity of lignin peroxidase and a S168W variant of manganese peroxidase.

Authors:  S L Timofeevski; G Nie; N S Reading; S D Aust
Journal:  Arch Biochem Biophys       Date:  2000-01-01       Impact factor: 4.013

2.  Horseradish peroxidase compound I: evidence for spin coupling between the heme iron and a 'free' radical.

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Journal:  FEBS Lett       Date:  1979-07-01       Impact factor: 4.124

3.  Identification by ENDOR of Trp191 as the free-radical site in cytochrome c peroxidase compound ES.

Authors:  M Sivaraja; D B Goodin; M Smith; B M Hoffman
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4.  Evidence from spin-trapping for a transient radical on tryptophan residue 171 of lignin peroxidase.

Authors:  W Blodig; A T Smith; K Winterhalter; K Piontek
Journal:  Arch Biochem Biophys       Date:  1999-10-01       Impact factor: 4.013

5.  Versatile peroxidase oxidation of high redox potential aromatic compounds: site-directed mutagenesis, spectroscopic and crystallographic investigation of three long-range electron transfer pathways.

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6.  Redesign of cytochrome c peroxidase into a manganese peroxidase: role of tryptophans in peroxidase activity.

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7.  Replacement of an electron transfer pathway in cytochrome c peroxidase with a surrogate peptide.

Authors:  Anna-Maria A Hays Putnam; Young-Tae Lee; David B Goodin
Journal:  Biochemistry       Date:  2009-01-13       Impact factor: 3.162

8.  Substrate electric dipole moment exerts a pH-dependent effect on electron transfer in Escherichia coli photolyase.

Authors:  Sofia M Kapetanaki; Meghan Ramsey; Yvonne M Gindt; Johannes P M Schelvis
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9.  Zero-field splitting of Fe3+ in horseradish peroxidase and of Fe4+ in horseradish peroxidase compound I from electron spin relaxation data.

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10.  Two [Fe(IV)=O Trp*] intermediates in M. tuberculosis catalase-peroxidase discriminated by multifrequency (9-285 GHz) EPR spectroscopy: reactivity toward isoniazid.

Authors:  Rahul Singh; Jack Switala; Peter C Loewen; Anabella Ivancich
Journal:  J Am Chem Soc       Date:  2007-12-04       Impact factor: 15.419

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  27 in total

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Authors:  Stefan Stoll; Hannah S Shafaat; J Krzystek; Andrew Ozarowski; Michael J Tauber; Judy E Kim; R David Britt
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Authors:  Thomas L Poulos
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Review 5.  Thirty years of heme peroxidase structural biology.

Authors:  Thomas L Poulos
Journal:  Arch Biochem Biophys       Date:  2010-03-03       Impact factor: 4.013

6.  Diradical intermediate within the context of tryptophan tryptophylquinone biosynthesis.

Authors:  Erik T Yukl; Fange Liu; J Krzystek; Sooim Shin; Lyndal M R Jensen; Victor L Davidson; Carrie M Wilmot; Aimin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

7.  Fluorescence of tryptophan in designed hairpin and Trp-cage miniproteins: measurements of fluorescence yields and calculations by quantum mechanical molecular dynamics simulations.

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8.  Limits of Versatility of Versatile Peroxidase.

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9.  High-Frequency/High-Field Electron Paramagnetic Resonance and Theoretical Studies of Tryptophan-Based Radicals.

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10.  Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts.

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Journal:  J Fungi (Basel)       Date:  2021-04-21
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