Literature DB >> 27129968

Limits of Versatility of Versatile Peroxidase.

Doriv Knop1, Dana Levinson1, Arik Makovitzki2, Avi Agami2, Elad Lerer2, Avishai Mimran2, Oded Yarden1, Yitzhak Hadar3.   

Abstract

UNLABELLED: Although Mn(2+) is the most abundant substrate of versatile peroxidases (VPs), repression of Pleurotus ostreatus vp1 expression occurred in Mn(2+)-sufficient medium. This seems to be a biological contradiction. The aim of this study was to explore the mechanism of direct oxidation by VP1 under Mn(2+)-deficient conditions, as it was found to be the predominant enzyme during fungal growth in the presence of synthetic and natural substrates. The native VP1 was purified and characterized using three substrates, Mn(2+), Orange II (OII), and Reactive Black 5 (RB5), each oxidized by a different active site in the enzyme. While the pH optimum for Mn(2+) oxidation is 5, the optimum pH for direct oxidation of both dyes was found to be 3. Indeed, effective in vivo decolorization occurred in media without addition of Mn(2+) only under acidic conditions. We have determined that Mn(2+) inhibits in vitro the direct oxidation of both OII and RB5 while RB5 stabilizes both Mn(2+) and OII oxidation. Furthermore, OII was found to inhibit the oxidation of both Mn(2+) and RB5. In addition, we could demonstrate that VP1 can cleave OII in two different modes. Under Mn(2+)-mediated oxidation conditions, VP1 was able to cleave the azo bond only in asymmetric mode, while under the optimum conditions for direct oxidation (absence of Mn(2+) at pH 3) both symmetric and asymmetric cleavages occurred. We concluded that the oxidation mechanism of aromatic compounds by VP1 is controlled by Mn(2+) and pH levels both in the growth medium and in the reaction mixture. IMPORTANCE: VP1 is a member of the ligninolytic heme peroxidase gene family of the white rot fungus Pleurotus ostreatus and plays a fundamental role in biodegradation. This enzyme exhibits a versatile nature, as it can oxidize different substrates under altered environmental conditions. VPs are highly interesting enzymes due to the fact that they contain unique active sites that are responsible for direct oxidation of various aromatic compounds, including lignin, in addition to the well-known Mn(2+) binding active site. This study demonstrates the limits of versatility of P. ostreatus VP1, which harbors multiple active sites, exhibiting a broad range of enzymatic activities, but they perform differently under distinct conditions. The versatility of P. ostreatus and its enzymes is an advantageous factor in the fungal ability to adapt to changing environments. This trait expands the possibilities for the potential utilization of P. ostreatus and other white rot fungi.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID: 27129968      PMCID: PMC4959207          DOI: 10.1128/AEM.00743-16

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  33 in total

1.  Lignocellulosic polysaccharides and lignin degradation by wood decay fungi: the relevance of nonenzymatic Fenton-based reactions.

Authors:  Valdeir Arantes; Adriane M F Milagres; Timothy R Filley; Barry Goodell
Journal:  J Ind Microbiol Biotechnol       Date:  2010-08-14       Impact factor: 3.346

Review 2.  Substrate binding and catalysis in heme peroxidases.

Authors:  A T Smith; N C Veitch
Journal:  Curr Opin Chem Biol       Date:  1998-04       Impact factor: 8.822

3.  Manganese deficiency can replace high oxygen levels needed for lignin peroxidase formation by Phanerochaete chrysosporium.

Authors:  N Rothschild; A Levkowitz; Y Hadar; C G Dosoretz
Journal:  Appl Environ Microbiol       Date:  1999-02       Impact factor: 4.792

4.  Versatile peroxidase oxidation of high redox potential aromatic compounds: site-directed mutagenesis, spectroscopic and crystallographic investigation of three long-range electron transfer pathways.

Authors:  Marta Pérez-Boada; Francisco J Ruiz-Dueñas; Rebecca Pogni; Riccardo Basosi; Thomas Choinowski; María Jesús Martínez; Klaus Piontek; Angel T Martínez
Journal:  J Mol Biol       Date:  2005-10-03       Impact factor: 5.469

Review 5.  New and classic families of secreted fungal heme peroxidases.

Authors:  Martin Hofrichter; René Ullrich; Marek J Pecyna; Christiane Liers; Taina Lundell
Journal:  Appl Microbiol Biotechnol       Date:  2010-05-22       Impact factor: 4.813

6.  Mechanism of manganese peroxidase compound II reduction. Effect of organic acid chelators and pH.

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Journal:  Biochemistry       Date:  1994-07-26       Impact factor: 3.162

7.  Site-directed mutagenesis of the catalytic tryptophan environment in Pleurotus eryngii versatile peroxidase.

Authors:  Francisco J Ruiz-Dueñas; María Morales; María J Mate; Antonio Romero; María Jesús Martínez; Andrew T Smith; Angel T Martínez
Journal:  Biochemistry       Date:  2008-01-18       Impact factor: 3.162

Review 8.  Structure and action mechanism of ligninolytic enzymes.

Authors:  Dominic W S Wong
Journal:  Appl Biochem Biotechnol       Date:  2008-06-26       Impact factor: 2.926

9.  Stimulation of Mn peroxidase activity: a possible role for oxalate in lignin biodegradation.

Authors:  I C Kuan; M Tien
Journal:  Proc Natl Acad Sci U S A       Date:  1993-02-15       Impact factor: 11.205

10.  Effect of manganese on preferential degradation of lignin by Pleurotus ostreatus during solid-state fermentation.

Authors:  Z Kerem; Y Hadar
Journal:  Appl Environ Microbiol       Date:  1995-08       Impact factor: 4.792

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Authors:  Alona S Sekan; Olena S Myronycheva; Olov Karlsson; Andrii P Gryganskyi; Yaroslav Blume
Journal:  PeerJ       Date:  2019-03-29       Impact factor: 2.984

2.  Stable and Functionally Diverse Versatile Peroxidases Designed Directly from Sequences.

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Journal:  J Am Chem Soc       Date:  2022-02-18       Impact factor: 15.419

3.  Enzymatic Degradation of Multiple Major Mycotoxins by Dye-Decolorizing Peroxidase from Bacillus subtilis.

Authors:  Xing Qin; Xiaoyun Su; Tao Tu; Jie Zhang; Xiaolu Wang; Yaru Wang; Yuan Wang; Yingguo Bai; Bin Yao; Huiying Luo; Huoqing Huang
Journal:  Toxins (Basel)       Date:  2021-06-19       Impact factor: 4.546

Review 4.  Linking Enzymatic Oxidative Degradation of Lignin to Organics Detoxification.

Authors:  Xiaolu Wang; Bin Yao; Xiaoyun Su
Journal:  Int J Mol Sci       Date:  2018-10-28       Impact factor: 5.923

5.  Efficient Degradation of Zearalenone by Dye-Decolorizing Peroxidase from Streptomyces thermocarboxydus Combining Catalytic Properties of Manganese Peroxidase and Laccase.

Authors:  Xing Qin; Yanzhe Xin; Xiaoyun Su; Xiaolu Wang; Yaru Wang; Jie Zhang; Tao Tu; Bin Yao; Huiying Luo; Huoqing Huang
Journal:  Toxins (Basel)       Date:  2021-08-28       Impact factor: 4.546

  5 in total

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