Literature DB >> 29488750

High-Frequency/High-Field Electron Paramagnetic Resonance and Theoretical Studies of Tryptophan-Based Radicals.

Ian Davis1,2, Teruaki Koto1, James R Terrell2, Alexander Kozhanov3, J Krzystek4, Aimin Liu1.   

Abstract

Tryptophan-based free radicals have been implicated in a myriad of catalytic and electron transfer reactions in biology. However, very few of them have been trapped so that biophysical characterizations can be performed in a high-precision context. In this work, tryptophan derivative-based radicals were studied by high-frequency/high-field electron paramagnetic resonance (HFEPR) and quantum chemical calculations. Radicals were generated at liquid nitrogen temperature with a photocatalyst, sacrificial oxidant, and violet laser. The precise g-anisotropies of l- and d-tryptophan, 5-hydroxytryptophan, 5-methoxytryptophan, 5-fluorotryptophan, and 7-hydroxytryptophan were measured directly by HFEPR. Quantum chemical calculations were conducted to predict both neutral and cationic radical spectra for comparison with the experimental data. The results indicate that under the experimental conditions, all radicals formed were cationic. Spin densities of the radicals were also calculated. The various line patterns and g-anisotropies observed by HFEPR can be understood in terms of spin-density populations and the positioning of oxygen atom substitution on the tryptophan ring. The results are considered in the light of the tryptophan and 7-hydroxytryptophan diradical found in the biosynthesis of the tryptophan tryptophylquinone cofactor of methylamine dehydrogenase.

Entities:  

Year:  2018        PMID: 29488750      PMCID: PMC5876142          DOI: 10.1021/acs.jpca.7b12434

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  31 in total

1.  Environment of tryptophan side chains in proteins.

Authors:  U Samanta; D Pal; P Chakrabarti
Journal:  Proteins       Date:  2000-02-15

2.  Ultrawide band multifrequency high-field EMR technique: A methodology for increasing spectroscopic information.

Authors:  A K Hassan; L A Pardi; J Krzystek; A Sienkiewicz; P Goy; M Rohrer; L C Brunel
Journal:  J Magn Reson       Date:  2000-02       Impact factor: 2.229

3.  Hydrogen bonding of tryptophan radicals revealed by EPR at 700 GHz.

Authors:  Stefan Stoll; Hannah S Shafaat; J Krzystek; Andrew Ozarowski; Michael J Tauber; Judy E Kim; R David Britt
Journal:  J Am Chem Soc       Date:  2011-10-25       Impact factor: 15.419

Review 4.  Structure and function of photosystems I and II.

Authors:  Nathan Nelson; Charles F Yocum
Journal:  Annu Rev Plant Biol       Date:  2006       Impact factor: 26.379

5.  Diradicals.

Authors:  Manabu Abe
Journal:  Chem Rev       Date:  2013-07-24       Impact factor: 60.622

Review 6.  Endogenous kynurenines as targets for drug discovery and development.

Authors:  Trevor W Stone; L Gail Darlington
Journal:  Nat Rev Drug Discov       Date:  2002-08       Impact factor: 84.694

7.  A catalytic di-heme bis-Fe(IV) intermediate, alternative to an Fe(IV)=O porphyrin radical.

Authors:  Xianghui Li; Rong Fu; Sheeyong Lee; Carsten Krebs; Victor L Davidson; Aimin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-18       Impact factor: 11.205

Review 8.  Tryptophan or tyrosine? On the nature of the amino acid radical formed following hydrogen peroxide treatment of cytochrome c oxidase.

Authors:  Dimitri A Svistunenko; Mike T Wilson; Chris E Cooper
Journal:  Biochim Biophys Acta       Date:  2004-04-12

9.  NAD biosynthesis: identification of the tryptophan to quinolinate pathway in bacteria.

Authors:  Oleg Kurnasov; Vasiliy Goral; Keri Colabroy; Svetlana Gerdes; Shubha Anantha; Andrei Osterman; Tadhg P Begley
Journal:  Chem Biol       Date:  2003-12

10.  Crystal environments probed by EPR spectroscopy. Variations in the EPR spectra of Co(II)(octaethylporphyrin) doped in crystalline diamagnetic hosts and a reassessment of the electronic structure of four-coordinate cobalt(II).

Authors:  Andrew Ozarowski; Hon Man Lee; Alan L Balch
Journal:  J Am Chem Soc       Date:  2003-10-15       Impact factor: 15.419

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