Literature DB >> 19801994

Emergent bistability by a growth-modulating positive feedback circuit.

Cheemeng Tan1, Philippe Marguet, Lingchong You.   

Abstract

Synthetic gene circuits are often engineered by considering the host cell as an invariable 'chassis'. Circuit activation, however, may modulate host physiology, which in turn can substantially impact circuit behavior. We illustrate this point by a simple circuit consisting of mutant T7 RNA polymerase (T7 RNAP*) that activates its own expression in the bacterium Escherichia coli. Although activation by the T7 RNAP* is noncooperative, the circuit caused bistable gene expression. This counterintuitive observation can be explained by growth retardation caused by circuit activation, which resulted in nonlinear dilution of T7 RNAP* in individual bacteria. Predictions made by models accounting for such effects were verified by further experimental measurements. Our results reveal a new mechanism of generating bistability and underscore the need to account for host physiology modulation when engineering gene circuits.

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Year:  2009        PMID: 19801994      PMCID: PMC2908482          DOI: 10.1038/nchembio.218

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  47 in total

1.  Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.

Authors:  A Becskei; B Séraphin; L Serrano
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

2.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

3.  Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase.

Authors:  Y Whitney Yin; Thomas A Steitz
Journal:  Science       Date:  2002-09-19       Impact factor: 47.728

4.  Global gene expression profiling of asymptomatic bacteriuria Escherichia coli during biofilm growth in human urine.

Authors:  Viktoria Hancock; Per Klemm
Journal:  Infect Immun       Date:  2006-12-04       Impact factor: 3.441

5.  Equilibrium and stopped-flow kinetic studies of interaction between T7 RNA polymerase and its promoters measured by protein and 2-aminopurine fluorescence changes.

Authors:  Y Jia; A Kumar; S S Patel
Journal:  J Biol Chem       Date:  1996-11-29       Impact factor: 5.157

6.  Spatiotemporal control of gene expression with pulse-generating networks.

Authors:  Subhayu Basu; Rishabh Mehreja; Stephan Thiberge; Ming-Tang Chen; Ron Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

7.  An engineered epigenetic transgene switch in mammalian cells.

Authors:  Beat P Kramer; Alessandro Usseglio Viretta; Marie Daoud-El-Baba; Dominique Aubel; Wilfried Weber; Martin Fussenegger
Journal:  Nat Biotechnol       Date:  2004-06-06       Impact factor: 54.908

Review 8.  Synthetic biology.

Authors:  Steven A Benner; A Michael Sismour
Journal:  Nat Rev Genet       Date:  2005-07       Impact factor: 53.242

9.  Accurate prediction of gene feedback circuit behavior from component properties.

Authors:  Nitzan Rosenfeld; Jonathan W Young; Uri Alon; Peter S Swain; Michael B Elowitz
Journal:  Mol Syst Biol       Date:  2007-11-13       Impact factor: 11.429

10.  A synthetic Escherichia coli predator-prey ecosystem.

Authors:  Frederick K Balagaddé; Hao Song; Jun Ozaki; Cynthia H Collins; Matthew Barnet; Frances H Arnold; Stephen R Quake; Lingchong You
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

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  137 in total

1.  A common repressor pool results in indeterminacy of extrinsic noise.

Authors:  Michail Stamatakis; Rhys M Adams; Gábor Balázsi
Journal:  Chaos       Date:  2011-12       Impact factor: 3.642

2.  Emergent bistability: effects of additive and multiplicative noise.

Authors:  S Ghosh; S Banerjee; I Bose
Journal:  Eur Phys J E Soft Matter       Date:  2012-02-23       Impact factor: 1.890

Review 3.  The role of physiological heterogeneity in microbial population behavior.

Authors:  Mary E Lidstrom; Michael C Konopka
Journal:  Nat Chem Biol       Date:  2010-09-17       Impact factor: 15.040

4.  The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation.

Authors:  Jin Wang; Li Xu; Erkang Wang; Sui Huang
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

Review 5.  Engineering microbial systems to explore ecological and evolutionary dynamics.

Authors:  Yu Tanouchi; Robert P Smith; Lingchong You
Journal:  Curr Opin Biotechnol       Date:  2012-02-04       Impact factor: 9.740

6.  Bistability and oscillations in co-repressive synthetic microbial consortia.

Authors:  Mehdi Sadeghpour; Alan Veliz-Cuba; Gábor Orosz; Krešimir Josić; Matthew R Bennett
Journal:  Quant Biol       Date:  2017-03-30

7.  Protocell design through modular compartmentalization.

Authors:  David Miller; Paula J Booth; John M Seddon; Richard H Templer; Robert V Law; Rudiger Woscholski; Oscar Ces; Laura M C Barter
Journal:  J R Soc Interface       Date:  2013-08-07       Impact factor: 4.118

8.  Ribozyme-based insulator parts buffer synthetic circuits from genetic context.

Authors:  Chunbo Lou; Brynne Stanton; Ying-Ja Chen; Brian Munsky; Christopher A Voigt
Journal:  Nat Biotechnol       Date:  2012-10-03       Impact factor: 54.908

9.  Robust, tunable genetic memory from protein sequestration combined with positive feedback.

Authors:  Tatenda Shopera; William R Henson; Andrew Ng; Young Je Lee; Kenneth Ng; Tae Seok Moon
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

10.  The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria.

Authors:  J Barrett Deris; Minsu Kim; Zhongge Zhang; Hiroyuki Okano; Rutger Hermsen; Alexander Groisman; Terence Hwa
Journal:  Science       Date:  2013-11-29       Impact factor: 47.728

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