Literature DB >> 19801189

Caught in the act: quantifying protein behaviour in living cells.

Diane S Lidke1, Bridget S Wilson.   

Abstract

Protein localization and dynamics both have important roles in cell signal transduction. Biochemical studies have elucidated many details about the chain of events in signal cascades, but the poor temporal resolution and absence of spatial localization in these conventional techniques make it difficult to determine the "where and when" of protein interactions. Over the past decade, imaging technologies and biological tools have developed to a point where many fundamental questions about protein activity can be addressed at the molecular level in living cells, revealing spatio-temporal information that is not provided by traditional biochemical assays. In this review, we illustrate the power of emerging fluorescence microscopy techniques to capture and quantify protein dynamics.

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Year:  2009        PMID: 19801189      PMCID: PMC2783887          DOI: 10.1016/j.tcb.2009.08.004

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  74 in total

1.  Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking.

Authors:  Maxime Dahan; Sabine Lévi; Camilla Luccardini; Philippe Rostaing; Béatrice Riveau; Antoine Triller
Journal:  Science       Date:  2003-10-17       Impact factor: 47.728

2.  Probing the integrin-actin linkage using high-resolution protein velocity mapping.

Authors:  Claire M Brown; Benedict Hebert; David L Kolin; Jessica Zareno; Leanna Whitmore; Alan Rick Horwitz; Paul W Wiseman
Journal:  J Cell Sci       Date:  2006-12-15       Impact factor: 5.285

3.  Determining the stoichiometry of protein heterocomplexes in living cells with fluorescence fluctuation spectroscopy.

Authors:  Yan Chen; Joachim D Müller
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-16       Impact factor: 11.205

4.  Multiple association states between glycine receptors and gephyrin identified by SPT analysis.

Authors:  Marie-Virginie Ehrensperger; Cyril Hanus; Christian Vannier; Antoine Triller; Maxime Dahan
Journal:  Biophys J       Date:  2007-02-09       Impact factor: 4.033

5.  Oligomerization of the EGF receptor investigated by live cell fluorescence intensity distribution analysis.

Authors:  Saveez Saffarian; Yu Li; Elliot L Elson; Linda J Pike
Journal:  Biophys J       Date:  2007-05-11       Impact factor: 4.033

6.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

7.  Superresolution by localization of quantum dots using blinking statistics.

Authors:  Keith Lidke; Bernd Rieger; Thomas Jovin; Rainer Heintzmann
Journal:  Opt Express       Date:  2005-09-05       Impact factor: 3.894

8.  Live-cell imaging of dendritic spines by STED microscopy.

Authors:  U Valentin Nägerl; Katrin I Willig; Birka Hein; Stefan W Hell; Tobias Bonhoeffer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-21       Impact factor: 11.205

9.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.

Authors:  Hari Shroff; Catherine G Galbraith; James A Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2008-04-13       Impact factor: 28.547

10.  Going beyond 2D: Following membrane diffusion and topography in the IgE-Fc[Epsilon]RI system using 3-dimensional tracking microscopy.

Authors:  Nathan P Wells; Guillaume A Lessard; Mary E Phipps; Peter M Goodwin; Diane S Lidke; Bridget S Wilson; James H Werner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2009-02-24
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  20 in total

Review 1.  Mathematical simulation of membrane protein clustering for efficient signal transduction.

Authors:  Krishnan Radhakrishnan; Ádám Halász; Meghan M McCabe; Jeremy S Edwards; Bridget S Wilson
Journal:  Ann Biomed Eng       Date:  2012-06-06       Impact factor: 3.934

2.  Analyzing the homeostasis of signaling proteins by a combination of Western blot and fluorescence correlation spectroscopy.

Authors:  Yi-Da Chung; Michael D Sinzinger; Petra Bovee-Geurts; Marina Krause; Sip Dinkla; Irma Joosten; Werner J Koopman; Merel J W Adjobo-Hermans; Roland Brock
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

Review 3.  Diversity in genetic in vivo methods for protein-protein interaction studies: from the yeast two-hybrid system to the mammalian split-luciferase system.

Authors:  Bram Stynen; Hélène Tournu; Jan Tavernier; Patrick Van Dijck
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

4.  Coclustering of ErbB1 and ErbB2 revealed by FRET-sensitized acceptor bleaching.

Authors:  Agnes Szabó; János Szöllosi; Peter Nagy
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

Review 5.  Nanoscale membrane organization: where biochemistry meets advanced microscopy.

Authors:  Alessandra Cambi; Diane S Lidke
Journal:  ACS Chem Biol       Date:  2011-11-14       Impact factor: 5.100

6.  Molecular Diffusion in Plasma Membranes of Primary Lymphocytes Measured by Fluorescence Correlation Spectroscopy.

Authors:  Elina Staaf; Sunitha Bagawath-Singh; Sofia Johansson
Journal:  J Vis Exp       Date:  2017-02-01       Impact factor: 1.355

7.  Improved spatial direct method with gradient-based diffusion to retain full diffusive fluctuations.

Authors:  Wonryull Koh; Kim T Blackwell
Journal:  J Chem Phys       Date:  2012-10-21       Impact factor: 3.488

8.  Insights into cell membrane microdomain organization from live cell single particle tracking of the IgE high affinity receptor FcϵRI of mast cells.

Authors:  Flor A Espinoza; Michael J Wester; Janet M Oliver; Bridget S Wilson; Nicholas L Andrews; Diane S Lidke; Stanly L Steinberg
Journal:  Bull Math Biol       Date:  2012-06-26       Impact factor: 1.758

9.  Convenient and rapid removal of detergent from glycolipids in detergent-resistant membrane microdomains.

Authors:  Yusuke Suzuki; Kazuya Kabayama
Journal:  J Lipid Res       Date:  2012-01-03       Impact factor: 5.922

10.  Photoactivatable fluorescein derivatives caged with a (3-hydroxy-2-naphthalenyl)methyl group.

Authors:  Emmanuel E Nekongo; Vladimir V Popik
Journal:  J Org Chem       Date:  2014-08-01       Impact factor: 4.354

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