Literature DB >> 16383812

First passage and cooperativity of queuing kinetics.

Maria R D'Orsogna1, Tom Chou.   

Abstract

We model the kinetics of ligand-receptor systems, where multiple ligands may bind and unbind to the receptor, either randomly or in a specific order. Equilibrium occupation and first occurrence of complete filling of the receptor are determined and compared. At equilibrium, receptors that bind ligands sequentially are more likely to be saturated than those that bind in random order. Surprisingly however, for low cooperativity, the random process first reaches full occupancy faster than the sequential one. This is true except near a critical binding energy where a "kinetic trap" arises and the random process dramatically slows down when the number of binding sites N > or = 8. These results demonstrate the subtle interplay between cooperativity and sequentiality for a wide class of kinetic phenomena, including chemical binding, nucleation, and assembly line strategies.

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Year:  2005        PMID: 16383812     DOI: 10.1103/PhysRevLett.95.170603

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  5 in total

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3.  Effects of jamming on nonequilibrium transport times in nanochannels.

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Review 4.  Assembly of the transcription machinery: ordered and stable, random and dynamic, or both?

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5.  Protein complex formation: computational clarification of the sequential versus probabilistic recruitment puzzle.

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Journal:  PLoS One       Date:  2013-02-01       Impact factor: 3.240

  5 in total

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