Literature DB >> 29957941

Mapping Intrachannel Diffusive Dynamics of Interacting Molecules onto a Two-Site Model: Crossover in Flux Concentration Dependence.

Alexander M Berezhkovskii1,2, Sergey M Bezrukov1.   

Abstract

This study focuses on how interactions of solute molecules affect the concentration dependence of their flux through narrow membrane channels. It is assumed that the molecules cannot bypass each other because of their hard-core repulsion. In addition, other short- and long-range solute-solute interactions are included into consideration. These interactions make it impossible to develop an analytical theory for the flux in the framework of a diffusion model of solute dynamics in the channel. To overcome this difficulty, we course-grain the diffusion model by mapping it onto a two-site one, where the rate constants describing the solute dynamics are expressed in terms of the parameters of the initial diffusion model. This allows us (i) to find an analytical solution for the flux as a function of the solute concentration and (ii) to characterize the solute-solute interactions by two dimensionless parameters. Such a characterization proves to be very informative as it results in a clear classification of the effects of the solute-solute interactions on the concentration dependence of the flux. Unexpectedly, this dependence can be nonmonotonic, exhibiting a sharp maximum in a certain parameter range. We hypothesize that such a behavior may constitute an element of a regulatory mechanism, wherein maximal flux reports on the optimal solute concentration in the bulk near the channel entrance.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 29957941      PMCID: PMC6749833          DOI: 10.1021/acs.jpcb.8b04371

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  17 in total

Review 1.  Ion channel drug discovery: challenges and future directions.

Authors:  A Wickenden; B Priest; G Erdemli
Journal:  Future Med Chem       Date:  2012-04       Impact factor: 3.808

2.  On the applicability of entropy potentials in transport problems.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  Eur Phys J Spec Top       Date:  2014-12       Impact factor: 2.707

3.  Optimizing transport of metabolites through large channels: molecular sieves with and without binding.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  Biophys J       Date:  2004-12-30       Impact factor: 4.033

Review 4.  Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels.

Authors:  Sergei Yu Noskov; Benoît Roux
Journal:  J Gen Physiol       Date:  2007-01-16       Impact factor: 4.086

5.  Effects of multiple occupancy and interparticle interactions on selective transport through narrow channels: theory versus experiment.

Authors:  Anton Zilman
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

6.  Effects of jamming on nonequilibrium transport times in nanochannels.

Authors:  A Zilman; J Pearson; G Bel
Journal:  Phys Rev Lett       Date:  2009-09-17       Impact factor: 9.161

7.  What controls open-pore and residual currents in the first sensing zone of alpha-hemolysin nanopore? Combined experimental and theoretical study.

Authors:  Pablo M De Biase; Eric N Ervin; Prithwish Pal; Olga Samoylova; Suren Markosyan; Michael G Keehan; Geoffrey A Barrall; Sergei Yu Noskov
Journal:  Nanoscale       Date:  2016-06-02       Impact factor: 7.790

8.  Instantaneous ion configurations in the K+ ion channel selectivity filter revealed by 2D IR spectroscopy.

Authors:  Huong T Kratochvil; Joshua K Carr; Kimberly Matulef; Alvin W Annen; Hui Li; Michał Maj; Jared Ostmeyer; Arnaldo L Serrano; H Raghuraman; Sean D Moran; J L Skinner; Eduardo Perozo; Benoît Roux; Francis I Valiyaveetil; Martin T Zanni
Journal:  Science       Date:  2016-09-02       Impact factor: 47.728

9.  Brownian motion in confined geometries.

Authors:  S M Bezrukov; L Schimansky-Geier; G Schmid
Journal:  Eur Phys J Spec Top       Date:  2014-12-15       Impact factor: 2.707

10.  Dielectric saturation of water in a membrane protein channel.

Authors:  Marcel Aguilella-Arzo; Andreu Andrio; Vicente M Aguilella; Antonio Alcaraz
Journal:  Phys Chem Chem Phys       Date:  2008-10-30       Impact factor: 3.676

View more
  3 in total

1.  Blocker escape kinetics from a membrane channel analyzed by mapping blocker diffusive dynamics onto a two-site model.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2019-05-21       Impact factor: 3.488

2.  Broad distributions of transition-path times are fingerprints of multidimensionality of the underlying free energy landscapes.

Authors:  Rohit Satija; Alexander M Berezhkovskii; Dmitrii E Makarov
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-21       Impact factor: 11.205

3.  Transient probability currents provide upper and lower bounds on non-equilibrium steady-state currents in the Smoluchowski picture.

Authors:  Jeremy Copperman; David Aristoff; Dmitrii E Makarov; Gideon Simpson; Daniel M Zuckerman
Journal:  J Chem Phys       Date:  2019-11-07       Impact factor: 3.488

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.