Literature DB >> 19784397

An anisotropic scale-invariant unstructured mesh generator suitable for volumetric imaging data.

Andrew P Kuprat1, Daniel R Einstein.   

Abstract

We present a boundary-fitted, scale-invariant unstructured tetrahedral mesh generation algorithm that enables registration of element size to local feature size. Given an input triangulated surface mesh, a feature size field is determined by casting rays normal to the surface and into the geometry and then performing gradient-limiting operations to enforce continuity of the resulting field. Surface mesh density is adjusted to be proportional to the feature size field and then a layered anisotropic volume mesh is generated. This mesh is "scale-invariant" in that roughly the same number of layers of mesh exist in mesh cross-sections, between a minimum scale size L(min) and a maximum scale size L(max). We illustrate how this field can be used to produce quality grids for computational fluid dynamics based simulations of challenging, topologically complex biological surfaces derived from magnetic resonance images. The algorithm is implemented in the Pacific Northwest National Laboratory (PNNL) version of the Los Alamos grid toolbox LaGriT[14]. Research funded by the National Heart and Blood Institute Award 1RO1HL073598-01A1.

Entities:  

Year:  2009        PMID: 19784397      PMCID: PMC2752024          DOI: 10.1016/j.jcp.2008.09.030

Source DB:  PubMed          Journal:  J Comput Phys        ISSN: 0021-9991            Impact factor:   3.553


  3 in total

1.  Signed distance computation using the angle weighted pseudonormal.

Authors:  J Andreas Baerentzen; Henrik Aanaes
Journal:  IEEE Trans Vis Comput Graph       Date:  2005 May-Jun       Impact factor: 4.579

2.  Application of magnetic resonance (MR) imaging for the development and validation of computational fluid dynamic (CFD) models of the rat respiratory system.

Authors:  Kevin R Minard; Daniel R Einstein; Richard E Jacob; Senthil Kabilan; Andrew P Kuprat; Charles A Timchalk; Lynn L Trease; Richard A Corley
Journal:  Inhal Toxicol       Date:  2006-09       Impact factor: 2.724

3.  3D Finite Element Meshing from Imaging Data.

Authors:  Yongjie Zhang; Chandrajit Bajaj; Bong-Soo Sohn
Journal:  Comput Methods Appl Mech Eng       Date:  2005-11-15       Impact factor: 6.756

  3 in total
  16 in total

1.  Fluid-Structure Interactions of the Mitral Valve and Left Heart: Comprehensive Strategies, Past, Present and Future.

Authors:  Daniel R Einstein; Facundo Del Pin; Xiangmin Jiao; Andrew P Kuprat; James P Carson; Karyn S Kunzelman; Richard P Cochran; Julius M Guccione; Mark B Ratcliffe
Journal:  Int J Numer Methods Eng       Date:  2010-03       Impact factor: 3.477

2.  Phase-contrast MRI and CFD modeling of apparent ³He gas flow in rat pulmonary airways.

Authors:  Kevin R Minard; Andrew P Kuprat; Senthil Kabilan; Richard E Jacob; Daniel R Einstein; James P Carson; Richard A Corley
Journal:  J Magn Reson       Date:  2012-05-23       Impact factor: 2.229

3.  LOCAL ORTHOGONAL CUTTING METHOD FOR COMPUTING MEDIAL CURVES AND ITS BIOMEDICAL APPLICATIONS.

Authors:  Xiangmin Jiao; Daniel R Einstein; Vladimir Dyedov
Journal:  SIAM J Sci Comput       Date:  2010-03-01       Impact factor: 2.373

4.  High resolution lung airway cast segmentation with proper topology suitable for computational fluid dynamic simulations.

Authors:  James P Carson; Daniel R Einstein; Kevin R Minard; Michelle V Fanucchi; Christopher D Wallis; Richard A Corley
Journal:  Comput Med Imaging Graph       Date:  2010-04-10       Impact factor: 4.790

5.  Fluid-Structure Interaction Analysis of Papillary Muscle Forces Using a Comprehensive Mitral Valve Model with 3D Chordal Structure.

Authors:  Milan Toma; Morten Ø Jensen; Daniel R Einstein; Ajit P Yoganathan; Richard P Cochran; Karyn S Kunzelman
Journal:  Ann Biomed Eng       Date:  2015-07-17       Impact factor: 3.934

6.  Comparison of realistic and idealized breathing patterns in computational models of airflow and vapor dosimetry in the rodent upper respiratory tract.

Authors:  Sean M Colby; Senthil Kabilan; Richard E Jacob; Andrew P Kuprat; Daniel R Einstein; Richard A Corley
Journal:  Inhal Toxicol       Date:  2016       Impact factor: 2.724

7.  An efficient algorithm for mapping imaging data to 3D unstructured grids in computational biomechanics.

Authors:  Daniel R Einstein; Andrew P Kuprat; Xiangmin Jiao; James P Carson; David M Einstein; Richard E Jacob; Richard A Corley
Journal:  Int J Numer Method Biomed Eng       Date:  2012-05-16       Impact factor: 2.747

8.  An automated self-similarity analysis of the pulmonary tree of the Sprague-Dawley rat.

Authors:  Daniel R Einstein; Blazej Neradilak; Nayak Pollisar; Kevin R Minard; Chris Wallis; Michelle Fanucchi; James P Carson; Andrew P Kuprat; Senthil Kabilan; Richard E Jacob; Richard A Corley
Journal:  Anat Rec (Hoboken)       Date:  2008-12       Impact factor: 2.064

9.  Multiscale modeling in computational biomechanics.

Authors:  Merryn Tawhai; Jeff Bischoff; Daniel Einstein; Ahmet Erdemir; Trent Guess; Jeff Reinbolt
Journal:  IEEE Eng Med Biol Mag       Date:  2009 May-Jun

10.  A Bidirectional Coupling Procedure Applied to Multiscale Respiratory Modeling.

Authors:  A P Kuprat; S Kabilan; J P Carson; R A Corley; D R Einstein
Journal:  J Comput Phys       Date:  2013-07       Impact factor: 3.553

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