Literature DB >> 20382502

High resolution lung airway cast segmentation with proper topology suitable for computational fluid dynamic simulations.

James P Carson1, Daniel R Einstein, Kevin R Minard, Michelle V Fanucchi, Christopher D Wallis, Richard A Corley.   

Abstract

Developing detailed lung airway models is an important step towards understanding the respiratory system. While modern imaging and airway casting approaches have dramatically improved the potential detail of such models, challenges have arisen in image processing as the demand for greater detail pushes the image processing approaches to their limits. Airway segmentations with proper topology have neither loops nor invalid voxel-to-voxel connections. Here we describe a new technique for segmenting airways with proper topology and apply the approach to an image volume generated by magnetic resonance imaging of a silicone cast created from an excised monkey lung. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20382502      PMCID: PMC2923245          DOI: 10.1016/j.compmedimag.2010.03.001

Source DB:  PubMed          Journal:  Comput Med Imaging Graph        ISSN: 0895-6111            Impact factor:   4.790


  12 in total

1.  Automated graph-based analysis and correction of cortical volume topology.

Authors:  D W Shattuck; R M Leahy
Journal:  IEEE Trans Med Imaging       Date:  2001-11       Impact factor: 10.048

2.  Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm.

Authors:  Xiao Han; Chenyang Xu; Ulisses Braga-Neto; Jerry L Prince
Journal:  IEEE Trans Med Imaging       Date:  2002-02       Impact factor: 10.048

3.  Volume rendering and connectivity algorithms for MR angiography.

Authors:  H E Cline; C L Dumoulin; W E Lorensen; S P Souza; W J Adams
Journal:  Magn Reson Med       Date:  1991-04       Impact factor: 4.668

4.  Three-dimensional computational fluid dynamics simulations of particle deposition in the tracheobronchial tree.

Authors:  Kristin K Isaacs; R B Schlesinger; Ted B Martonen
Journal:  J Aerosol Med       Date:  2006

5.  Characteristics of airflow in a CT-based ovine lung: a numerical study.

Authors:  Senthil Kabilan; Ching-Long Lin; Eric A Hoffman
Journal:  J Appl Physiol (1985)       Date:  2006-11-16

6.  Topology repair of solid models using skeletons.

Authors:  Qian-Yi Zhou; Tao Ju; Shi-Min Hu
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Jul-Aug       Impact factor: 4.579

7.  Computational model of airflow in upper 17 generations of human respiratory tract.

Authors:  T Gemci; V Ponyavin; Y Chen; H Chen; R Collins
Journal:  J Biomech       Date:  2008-05-22       Impact factor: 2.712

8.  Three-dimensional segmentation and skeletonization to build an airway tree data structure for small animals.

Authors:  Ashutosh Chaturvedi; Zhenghong Lee
Journal:  Phys Med Biol       Date:  2005-03-16       Impact factor: 3.609

9.  An automated self-similarity analysis of the pulmonary tree of the Sprague-Dawley rat.

Authors:  Daniel R Einstein; Blazej Neradilak; Nayak Pollisar; Kevin R Minard; Chris Wallis; Michelle Fanucchi; James P Carson; Andrew P Kuprat; Senthil Kabilan; Richard E Jacob; Richard A Corley
Journal:  Anat Rec (Hoboken)       Date:  2008-12       Impact factor: 2.064

10.  An anisotropic scale-invariant unstructured mesh generator suitable for volumetric imaging data.

Authors:  Andrew P Kuprat; Daniel R Einstein
Journal:  J Comput Phys       Date:  2009-02-20       Impact factor: 3.553

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  10 in total

1.  Phase-contrast MRI and CFD modeling of apparent ³He gas flow in rat pulmonary airways.

Authors:  Kevin R Minard; Andrew P Kuprat; Senthil Kabilan; Richard E Jacob; Daniel R Einstein; James P Carson; Richard A Corley
Journal:  J Magn Reson       Date:  2012-05-23       Impact factor: 2.229

2.  Airway tree segmentation in serial block-face cryomicrotome images of rat lungs.

Authors:  Christian Bauer; Melissa A Krueger; Wayne J Lamm; Brian J Smith; Robb W Glenny; Reinhard R Beichel
Journal:  IEEE Trans Biomed Eng       Date:  2013-08-15       Impact factor: 4.538

3.  Development of a Zealand white rabbit deposition model to study inhalation anthrax.

Authors:  Bahman Asgharian; Owen Price; Senthil Kabilan; Richard E Jacob; Daniel R Einstein; Andrew P Kuprat; Richard A Corley
Journal:  Inhal Toxicol       Date:  2016       Impact factor: 2.724

4.  Branch-based model for the diameters of the pulmonary airways: accounting for departures from self-consistency and registration errors.

Authors:  Moni B Neradilek; Nayak L Polissar; Daniel R Einstein; Robb W Glenny; Kevin R Minard; James P Carson; Xiangmin Jiao; Richard E Jacob; Timothy C Cox; Edward M Postlethwait; Richard A Corley
Journal:  Anat Rec (Hoboken)       Date:  2012-04-24       Impact factor: 2.064

5.  Development of a rhesus monkey lung geometry model and application to particle deposition in comparison to humans.

Authors:  Bahman Asgharian; Owen Price; Gene McClellan; Rick Corley; Daniel R Einstein; Richard E Jacob; Jack Harkema; Stephan A Carey; Edward Schelegle; Dallas Hyde; Julia S Kimbell; Frederick J Miller
Journal:  Inhal Toxicol       Date:  2012-11       Impact factor: 2.724

6.  A Bidirectional Coupling Procedure Applied to Multiscale Respiratory Modeling.

Authors:  A P Kuprat; S Kabilan; J P Carson; R A Corley; D R Einstein
Journal:  J Comput Phys       Date:  2013-07       Impact factor: 3.553

7.  Comparative computational modeling of airflows and vapor dosimetry in the respiratory tracts of rat, monkey, and human.

Authors:  Richard A Corley; Senthil Kabilan; Andrew P Kuprat; James P Carson; Kevin R Minard; Richard E Jacob; Charles Timchalk; Robb Glenny; Sudhakar Pipavath; Timothy Cox; Christopher D Wallis; Richard F Larson; Michelle V Fanucchi; Edward M Postlethwait; Daniel R Einstein
Journal:  Toxicol Sci       Date:  2012-05-12       Impact factor: 4.849

8.  In situ casting and imaging of the rat airway tree for accurate 3D reconstruction.

Authors:  Richard E Jacob; Sean M Colby; Senthil Kabilan; Daniel R Einstein; James P Carson
Journal:  Exp Lung Res       Date:  2013-06-20       Impact factor: 2.459

9.  Dynamic multiscale boundary conditions for 4D CT of healthy and emphysematous rats.

Authors:  Richard E Jacob; James P Carson; Mathew Thomas; Daniel R Einstein
Journal:  PLoS One       Date:  2013-06-14       Impact factor: 3.240

10.  Stable small animal ventilation for dynamic lung imaging to support computational fluid dynamics models.

Authors:  Richard E Jacob; Wayne J Lamm
Journal:  PLoS One       Date:  2011-11-08       Impact factor: 3.240

  10 in total

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