Literature DB >> 19781521

Probing excited states and activation energy for the integral membrane protein phospholamban by NMR CPMG relaxation dispersion experiments.

Nathaniel J Traaseth1, Gianluigi Veglia.   

Abstract

Phospholamban (PLN) is a dynamic single-pass membrane protein that inhibits the flow of Ca(2+) ions into the sarcoplasmic reticulum (SR) of heart muscle by directly binding to and inhibiting the SR Ca(2+)ATPase (SERCA). The PLN monomer is the functionally active form that exists in equilibrium between ordered (T state) and disordered (R state) states. While the T state has been fully characterized using a hybrid solution/solid-state NMR approach, the R state structure has not been fully portrayed. It has, however, been detected by both NMR and EPR experiments in detergent micelles and lipid bilayers. In this work, we quantitatively probed the mus to ms dynamics of the PLN excited states by observing the T state in DPC micelles using CPMG relaxation dispersion NMR spectroscopy under functional conditions for SERCA. The (15)N backbone and (13)C(delta1) Ile-methyl dispersion curves were fit using a two-state equilibrium model, and indicate that residues within domain Ia (residues 1-16), the loop (17-22), and domain Ib (23-30) of PLN undergo mus-ms dynamics (k(ex)=6100+/-800 s(-1) at 17 degrees C). We measured k(ex) at additional temperatures, which allowed for a calculation of activation energy equal to approximately 5 kcal/mol. This energy barrier probably does not correspond to the detachment of the amphipathic domain Ia, but rather the energy needed to unwind domain Ib on the membrane surface, likely an important mechanism by which PLN converts between high and low affinity states for its binding partners. Copyright 2009 Elsevier B.V. All rights reserved.

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Year:  2009        PMID: 19781521      PMCID: PMC3328355          DOI: 10.1016/j.bbamem.2009.09.009

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  47 in total

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Review 3.  Probing invisible, low-populated States of protein molecules by relaxation dispersion NMR spectroscopy: an application to protein folding.

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4.  How to measure and analyze tryptophan fluorescence in membranes properly, and why bother?

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5.  A TROSY CPMG sequence for characterizing chemical exchange in large proteins.

Authors:  J P Loria; M Rance; A G Palmer
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

6.  A refinement protocol to determine structure, topology, and depth of insertion of membrane proteins using hybrid solution and solid-state NMR restraints.

Authors:  Lei Shi; Nathaniel J Traaseth; Raffaello Verardi; Alessandro Cembran; Jiali Gao; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2009-07-14       Impact factor: 2.835

7.  Cytoplasmic residues of phospholamban interact with membrane surfaces in the presence of SERCA: a new role for phospholipids in the regulation of cardiac calcium cycling?

Authors:  Eleri Hughes; Jonathan C Clayton; David A Middleton
Journal:  Biochim Biophys Acta       Date:  2008-11-14

8.  Mechanisms of antimicrobial, cytolytic, and cell-penetrating peptides: from kinetics to thermodynamics.

Authors:  Paulo F Almeida; Antje Pokorny
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Review 9.  Membrane interactions of antimicrobial peptides from Australian frogs.

Authors:  David I Fernandez; John D Gehman; Frances Separovic
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10.  Structure and topology of monomeric phospholamban in lipid membranes determined by a hybrid solution and solid-state NMR approach.

Authors:  Nathaniel J Traaseth; Lei Shi; Raffaello Verardi; Daniel G Mullen; George Barany; Gianluigi Veglia
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-09       Impact factor: 11.205

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  17 in total

1.  Heteronuclear Adiabatic Relaxation Dispersion (HARD) for quantitative analysis of conformational dynamics in proteins.

Authors:  Nathaniel J Traaseth; Fa-An Chao; Larry R Masterson; Silvia Mangia; Michael Garwood; Shalom Michaeli; Burckhard Seelig; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2012-04-06       Impact factor: 2.229

2.  Functional dynamics in the voltage-dependent anion channel.

Authors:  Saskia Villinger; Rodolfo Briones; Karin Giller; Ulrich Zachariae; Adam Lange; Bert L de Groot; Christian Griesinger; Stefan Becker; Markus Zweckstetter
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-10       Impact factor: 11.205

3.  Probing ground and excited states of phospholamban in model and native lipid membranes by magic angle spinning NMR spectroscopy.

Authors:  Martin Gustavsson; Nathaniel J Traaseth; Gianluigi Veglia
Journal:  Biochim Biophys Acta       Date:  2011-08-03

4.  Paramagnetic-based NMR restraints lift residual dipolar coupling degeneracy in multidomain detergent-solubilized membrane proteins.

Authors:  Lei Shi; Nathaniel J Traaseth; Raffaello Verardi; Martin Gustavsson; Jiali Gao; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2011-02-02       Impact factor: 15.419

5.  Probing slow protein dynamics by adiabatic R(1rho) and R(2rho) NMR experiments.

Authors:  Silvia Mangia; Nathaniel J Traaseth; Gianluigi Veglia; Michael Garwood; Shalom Michaeli
Journal:  J Am Chem Soc       Date:  2010-07-28       Impact factor: 15.419

6.  Structural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations.

Authors:  Alfonso De Simone; Kaustubh R Mote; Gianluigi Veglia
Journal:  Biophys J       Date:  2014-06-17       Impact factor: 4.033

7.  Structural topology of phospholamban pentamer in lipid bilayers by a hybrid solution and solid-state NMR method.

Authors:  Raffaello Verardi; Lei Shi; Nathaniel J Traaseth; Naomi Walsh; Gianluigi Veglia
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-16       Impact factor: 11.205

8.  cAMP-dependent protein kinase A selects the excited state of the membrane substrate phospholamban.

Authors:  Larry R Masterson; Tao Yu; Lei Shi; Yi Wang; Martin Gustavsson; Michael M Mueller; Gianluigi Veglia
Journal:  J Mol Biol       Date:  2011-07-02       Impact factor: 5.469

9.  Tuning the structural coupling between the transmembrane and cytoplasmic domains of phospholamban to control sarcoplasmic reticulum Ca(2+)-ATPase (SERCA) function.

Authors:  Kim N Ha; Martin Gustavsson; Gianluigi Veglia
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Review 10.  NMR structures of membrane proteins in phospholipid bilayers.

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Journal:  Q Rev Biophys       Date:  2014-07-17       Impact factor: 5.318

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