Literature DB >> 19509339

Structure and topology of monomeric phospholamban in lipid membranes determined by a hybrid solution and solid-state NMR approach.

Nathaniel J Traaseth1, Lei Shi, Raffaello Verardi, Daniel G Mullen, George Barany, Gianluigi Veglia.   

Abstract

Phospholamban (PLN) is an essential regulator of cardiac muscle contractility. The homopentameric assembly of PLN is the reservoir for active monomers that, upon deoligomerization form 1:1 complexes with the sarco(endo)plasmic reticulum Ca(2+)-ATPase (SERCA), thus modulating the rate of calcium uptake. In lipid bilayers and micelles, monomeric PLN exists in equilibrium between a bent (or resting) T state and a more dynamic (or active) R state. Here, we report the high-resolution structure and topology of the T state of a monomeric PLN mutant in lipid bilayers, using a hybrid of solution and solid-state NMR restraints together with molecular dynamics simulations in explicit lipid environments. Unlike the previous structural ensemble determined in micelles, this approach gives a complete picture of the PLN monomer structure in a lipid bilayer. This hybrid ensemble exemplifies the tilt, rotation, and depth of membrane insertion, revealing the interaction with the lipids for all protein domains. The N-terminal amphipathic helical domain Ia (residues 1-16) rests on the surface of the lipid membrane with the hydrophobic face of domain Ia embedded in the membrane bilayer interior. The helix comprised of domain Ib (residues 23-30) and transmembrane domain II (residues 31-52) traverses the bilayer with a tilt angle of approximately 24 degrees . The specific interactions between PLN and lipid membranes may represent an additional regulatory element of its inhibitory function. We propose this hybrid method for the simultaneous determination of structure and topology for membrane proteins with compact folds or proteins whose spatial arrangement is dictated by their specific interactions with lipid bilayers.

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Year:  2009        PMID: 19509339      PMCID: PMC2700893          DOI: 10.1073/pnas.0904290106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  62 in total

1.  E(z), a depth-dependent potential for assessing the energies of insertion of amino acid side-chains into membranes: derivation and applications to determining the orientation of transmembrane and interfacial helices.

Authors:  Alessandro Senes; Deborah C Chadi; Peter B Law; Robin F S Walters; Vikas Nanda; William F Degrado
Journal:  J Mol Biol       Date:  2006-09-12       Impact factor: 5.469

Review 2.  Amphipathic helices as mediators of the membrane interaction of amphitropic proteins, and as modulators of bilayer physical properties.

Authors:  Rosemary B Cornell; Svetla G Taneva
Journal:  Curr Protein Pept Sci       Date:  2006-12       Impact factor: 3.272

Review 3.  Membrane-protein topology.

Authors:  Gunnar von Heijne
Journal:  Nat Rev Mol Cell Biol       Date:  2006-12       Impact factor: 94.444

4.  Selective averaging for high-resolution solid-state NMR spectroscopy of aligned samples.

Authors:  Alexander A Nevzorov; Stanley J Opella
Journal:  J Magn Reson       Date:  2006-10-30       Impact factor: 2.229

5.  Structural dynamics and topology of phospholamban in oriented lipid bilayers using multidimensional solid-state NMR.

Authors:  N J Traaseth; J J Buffy; J Zamoon; G Veglia
Journal:  Biochemistry       Date:  2006-11-21       Impact factor: 3.162

6.  A general amphipathic alpha-helical motif for sensing membrane curvature.

Authors:  Guillaume Drin; Jean-François Casella; Romain Gautier; Thomas Boehmer; Thomas U Schwartz; Bruno Antonny
Journal:  Nat Struct Mol Biol       Date:  2007-01-14       Impact factor: 15.369

7.  Structural similarity of a membrane protein in micelles and membranes.

Authors:  Carla M Franzin; Peter Teriete; Francesca M Marassi
Journal:  J Am Chem Soc       Date:  2007-06-13       Impact factor: 15.419

8.  Using low-E resonators to reduce RF heating in biological samples for static solid-state NMR up to 900 MHz.

Authors:  Peter L Gor'kov; Eduard Y Chekmenev; Conggang Li; Myriam Cotten; Jarrod J Buffy; Nathaniel J Traaseth; Gianluigi Veglia; William W Brey
Journal:  J Magn Reson       Date:  2006-12-14       Impact factor: 2.229

9.  Backbone structure of the amantadine-blocked trans-membrane domain M2 proton channel from Influenza A virus.

Authors:  Jun Hu; Tom Asbury; Srisairam Achuthan; Conggang Li; Richard Bertram; Jack R Quine; Riqiang Fu; Timothy A Cross
Journal:  Biophys J       Date:  2007-03-23       Impact factor: 4.033

10.  Combined solid state and solution NMR studies of alpha,epsilon-15N labeled bovine rhodopsin.

Authors:  Karla Werner; Ines Lehner; Harpreet Kaur Dhiman; Christian Richter; Clemens Glaubitz; Harald Schwalbe; Judith Klein-Seetharaman; H Gobind Khorana
Journal:  J Biomol NMR       Date:  2007-02-23       Impact factor: 2.835

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  89 in total

1.  High-resolution membrane protein structure by joint calculations with solid-state NMR and X-ray experimental data.

Authors:  Ming Tang; Lindsay J Sperling; Deborah A Berthold; Charles D Schwieters; Anna E Nesbitt; Andrew J Nieuwkoop; Robert B Gennis; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-09-22       Impact factor: 2.835

2.  VITAL NMR: using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy.

Authors:  Michael C Brothers; Anna E Nesbitt; Michael J Hallock; Sanjeewa G Rupasinghe; Ming Tang; Jason Harris; Jerome Baudry; Mary A Schuler; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-11-03       Impact factor: 2.835

3.  Simultaneous acquisition of PAR and PAIN spectra.

Authors:  Anders B Nielsen; Kathrin Székely; Julia Gath; Matthias Ernst; Niels Chr Nielsen; Beat H Meier
Journal:  J Biomol NMR       Date:  2012-02-28       Impact factor: 2.835

4.  Topology and immersion depth of an integral membrane protein by paramagnetic rates from dissolved oxygen.

Authors:  M Sameer Al-Abdul-Wahid; Raffaello Verardi; Gianluigi Veglia; R Scott Prosser
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

5.  Multidimensional oriented solid-state NMR experiments enable the sequential assignment of uniformly 15N labeled integral membrane proteins in magnetically aligned lipid bilayers.

Authors:  Kaustubh R Mote; T Gopinath; Nathaniel J Traaseth; Jason Kitchen; Peter L Gor'kov; William W Brey; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2011-11       Impact factor: 2.835

Review 6.  Fuzzy complexes of myelin basic protein: NMR spectroscopic investigations of a polymorphic organizational linker of the central nervous system.

Authors:  David S Libich; Mumdooh A M Ahmed; Ligang Zhong; Vladimir V Bamm; Vladimir Ladizhansky; George Harauz
Journal:  Biochem Cell Biol       Date:  2010-04       Impact factor: 3.626

7.  Probing ground and excited states of phospholamban in model and native lipid membranes by magic angle spinning NMR spectroscopy.

Authors:  Martin Gustavsson; Nathaniel J Traaseth; Gianluigi Veglia
Journal:  Biochim Biophys Acta       Date:  2011-08-03

8.  Proton-evolved local-field solid-state NMR studies of cytochrome b5 embedded in bicelles, revealing both structural and dynamical information.

Authors:  Ronald Soong; Pieter E S Smith; Jiadi Xu; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

9.  Paramagnetic-based NMR restraints lift residual dipolar coupling degeneracy in multidomain detergent-solubilized membrane proteins.

Authors:  Lei Shi; Nathaniel J Traaseth; Raffaello Verardi; Martin Gustavsson; Jiali Gao; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2011-02-02       Impact factor: 15.419

10.  Dual acquisition magic-angle spinning solid-state NMR-spectroscopy: simultaneous acquisition of multidimensional spectra of biomacromolecules.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  Angew Chem Int Ed Engl       Date:  2012-02-06       Impact factor: 15.336

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