Literature DB >> 19772361

Probing the dynamics of a protein hydrophobic core by deuteron solid-state nuclear magnetic resonance spectroscopy.

Liliya Vugmeyster1, Dmitry Ostrovsky, Joseph J Ford, Sarah D Burton, Andrew S Lipton, Gina L Hoatson, Robert L Vold.   

Abstract

With the goal of investigating dynamical features of hydrophobic cores of proteins over a wide range of temperatures, the chicken villin headpiece subdomain protein (HP36) was labeled at a "single" site corresponding to any one of the two C(delta)D(3) groups of leucine-69, which is located in a key position of the core. The main techniques employed are deuteron NMR quadrupolar echo line shape analysis, and T(1Z) (Zeeman) and T(1Q) (quadrupolar order) relaxation experiments performed at 11.7 and 17.6 T over the temperature range of 112 to 298 K. The experimental data are compared with computer simulations. The deuteron line shapes give an excellent fit to a three-mode motional model that consists of (a) fast three-site rotational jumps about the pseudo C(3) methyl spinning axis, (b) slower reorientation of the spinning axis, described by diffusion along a restricted arc, and (c) large angle jumps between traces of rotameric conformers. Relaxation behavior is described by a phenomenological distribution of activation energies for three-site hops at high temperatures that collapses to a single, distinctly smaller value for lower temperatures.

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Year:  2009        PMID: 19772361     DOI: 10.1021/ja902977u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  25 in total

1.  Thermal hysteresis in the backbone and side-chain dynamics of the elastin mimetic peptide [VPGVG]3 revealed by 2H NMR.

Authors:  Xiang Ma; Cheng Sun; Jiaxin Huang; Gregory S Boutis
Journal:  J Phys Chem B       Date:  2011-12-20       Impact factor: 2.991

Review 2.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

3.  Effect of subdomain interactions on methyl group dynamics in the hydrophobic core of villin headpiece protein.

Authors:  Liliya Vugmeyster; Tien Do; Dmitry Ostrovsky; Riqianq Fu
Journal:  Protein Sci       Date:  2013-12-03       Impact factor: 6.725

Review 4.  Basic experiments in 2H static NMR for the characterization of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Methods       Date:  2018-04-27       Impact factor: 3.608

5.  Temperature dependence of fast carbonyl backbone dynamics in chicken villin headpiece subdomain.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  J Biomol NMR       Date:  2011-03-17       Impact factor: 2.835

6.  Comparative Dynamics of Methionine Side-Chain in FMOC-Methionine and in Amyloid Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Chem Phys Lett       Date:  2017-02-14       Impact factor: 2.328

7.  Protein dynamics in the solid state from 2H NMR line shape analysis: a consistent perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2015-02-03       Impact factor: 2.991

8.  Fast Motions of Key Methyl Groups in Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Matthew A Clark; Isaac B Falconer; Gina L Hoatson; Wei Qiang
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

9.  Sum frequency generation and solid-state NMR study of the structure, orientation, and dynamics of polystyrene-adsorbed peptides.

Authors:  Tobias Weidner; Nicholas F Breen; Kun Li; Gary P Drobny; David G Castner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-13       Impact factor: 11.205

10.  Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR.

Authors:  Qing Zhe Ni; Evgeny Markhasin; Thach V Can; Björn Corzilius; Kong Ooi Tan; Alexander B Barnes; Eugenio Daviso; Yongchao Su; Judith Herzfeld; Robert G Griffin
Journal:  J Phys Chem B       Date:  2017-05-10       Impact factor: 2.991

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