Literature DB >> 19766737

Structural basis for sirtuin function: what we know and what we don't.

Brandi D Sanders1, Brittany Jackson, Ronen Marmorstein.   

Abstract

The sirtuin (silent information regulator 2) proteins are NAD(+)-dependent deacetylases that are implicated in diverse biological processes including DNA regulation, metabolism, and longevity. Homologues of the prototypic yeast Sir2p have been identified in all three kingdoms of life, and while bacteria and archaea typically contain one to two sirtuins, eukaryotic organisms contain multiple members. Sirtuins are regulated in part by the cellular concentrations of the noncompetitive inhibitor, nicotinamide, and several synthetic modulators of these enzymes have been identified. The x-ray crystal structures of several sirtuin proteins in various liganded forms have been determined. This wealth of structural information, together with related biochemical studies, have provided important insights into the catalytic mechanism, substrate specificity, and inhibitory mechanism of sirtuin proteins. Implications for future structural studies to address outstanding questions in the field are also discussed. Copyright 2009 Elsevier B.V. All rights reserved.

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Year:  2009        PMID: 19766737      PMCID: PMC2886166          DOI: 10.1016/j.bbapap.2009.09.009

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  53 in total

1.  Structure of a Sir2 enzyme bound to an acetylated p53 peptide.

Authors:  Jose L Avalos; Ivana Celic; Shabazz Muhammad; Michael S Cosgrove; Jef D Boeke; Cynthia Wolberger
Journal:  Mol Cell       Date:  2002-09       Impact factor: 17.970

2.  Chemistry of gene silencing: the mechanism of NAD+-dependent deacetylation reactions.

Authors:  A A Sauve; I Celic; J Avalos; H Deng; J D Boeke; V L Schramm
Journal:  Biochemistry       Date:  2001-12-25       Impact factor: 3.162

3.  Inhibition of silencing and accelerated aging by nicotinamide, a putative negative regulator of yeast sir2 and human SIRT1.

Authors:  Kevin J Bitterman; Rozalyn M Anderson; Haim Y Cohen; Magda Latorre-Esteves; David A Sinclair
Journal:  J Biol Chem       Date:  2002-09-23       Impact factor: 5.157

4.  Insights into the sirtuin mechanism from ternary complexes containing NAD+ and acetylated peptide.

Authors:  Kevin G Hoff; José L Avalos; Kristin Sens; Cynthia Wolberger
Journal:  Structure       Date:  2006-08       Impact factor: 5.006

5.  The interaction of Alba, a conserved archaeal chromatin protein, with Sir2 and its regulation by acetylation.

Authors:  Stephen D Bell; Catherine H Botting; Benjamin N Wardleworth; Stephen P Jackson; Malcolm F White
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

6.  Structural identification of 2'- and 3'-O-acetyl-ADP-ribose as novel metabolites derived from the Sir2 family of beta -NAD+-dependent histone/protein deacetylases.

Authors:  Michael D Jackson; John M Denu
Journal:  J Biol Chem       Date:  2002-03-13       Impact factor: 5.157

7.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan.

Authors:  Konrad T Howitz; Kevin J Bitterman; Haim Y Cohen; Dudley W Lamming; Siva Lavu; Jason G Wood; Robert E Zipkin; Phuong Chung; Anne Kisielewski; Li-Li Zhang; Brandy Scherer; David A Sinclair
Journal:  Nature       Date:  2003-08-24       Impact factor: 49.962

8.  Sir2 regulation by nicotinamide results from switching between base exchange and deacetylation chemistry.

Authors:  Anthony A Sauve; Vern L Schramm
Journal:  Biochemistry       Date:  2003-08-12       Impact factor: 3.162

9.  Structural basis for the NAD-dependent deacetylase mechanism of Sir2.

Authors:  Jeong-Ho Chang; Hyun-Chul Kim; Kwang-Yeon Hwang; Joon-Won Lee; Stephen P Jackson; Stephen D Bell; Yunje Cho
Journal:  J Biol Chem       Date:  2002-06-28       Impact factor: 5.157

10.  Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine.

Authors:  V J Starai; I Celic; R N Cole; J D Boeke; J C Escalante-Semerena
Journal:  Science       Date:  2002-12-20       Impact factor: 47.728

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  64 in total

Review 1.  Sirtuins in neurodegenerative diseases: a biological-chemical perspective.

Authors:  Aparna Raghavan; Zahoor A Shah
Journal:  Neurodegener Dis       Date:  2011-10-28       Impact factor: 2.977

2.  SIRT1 contains N- and C-terminal regions that potentiate deacetylase activity.

Authors:  Min Pan; Hua Yuan; Michael Brent; Emily Chen Ding; Ronen Marmorstein
Journal:  J Biol Chem       Date:  2011-12-07       Impact factor: 5.157

3.  A mechanism-based potent sirtuin inhibitor containing Nε-thiocarbamoyl-lysine (TuAcK).

Authors:  Brett M Hirsch; Yujun Hao; Xiaopeng Li; Chrys Wesdemiotis; Zhenghe Wang; Weiping Zheng
Journal:  Bioorg Med Chem Lett       Date:  2011-06-22       Impact factor: 2.823

4.  Structural and functional analysis of human SIRT1.

Authors:  Andrew M Davenport; Ferdinand M Huber; André Hoelz
Journal:  J Mol Biol       Date:  2013-10-10       Impact factor: 5.469

Review 5.  Acylation of Biomolecules in Prokaryotes: a Widespread Strategy for the Control of Biological Function and Metabolic Stress.

Authors:  Kristy L Hentchel; Jorge C Escalante-Semerena
Journal:  Microbiol Mol Biol Rev       Date:  2015-07-15       Impact factor: 11.056

6.  Structure and biochemical functions of SIRT6.

Authors:  Patricia W Pan; Jessica L Feldman; Mark K Devries; Aiping Dong; Aled M Edwards; John M Denu
Journal:  J Biol Chem       Date:  2011-03-01       Impact factor: 5.157

Review 7.  Structural basis for sirtuin activity and inhibition.

Authors:  Hua Yuan; Ronen Marmorstein
Journal:  J Biol Chem       Date:  2012-10-18       Impact factor: 5.157

8.  SIRT1 is a redox-sensitive deacetylase that is post-translationally modified by oxidants and carbonyl stress.

Authors:  Samuel Caito; Saravanan Rajendrasozhan; Suzanne Cook; Sangwoon Chung; Hongwei Yao; Alan E Friedman; Paul S Brookes; Irfan Rahman
Journal:  FASEB J       Date:  2010-04-12       Impact factor: 5.191

Review 9.  Using mitochondrial sirtuins as drug targets: disease implications and available compounds.

Authors:  Melanie Gertz; Clemens Steegborn
Journal:  Cell Mol Life Sci       Date:  2016-03-23       Impact factor: 9.261

10.  Sirtuin Deacetylation Mechanism and Catalytic Role of the Dynamic Cofactor Binding Loop.

Authors:  Yawei Shi; Yanzi Zhou; Shenglong Wang; Yingkai Zhang
Journal:  J Phys Chem Lett       Date:  2013-02-07       Impact factor: 6.475

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