Literature DB >> 23086949

Structural basis for sirtuin activity and inhibition.

Hua Yuan1, Ronen Marmorstein.   

Abstract

Sir2 proteins, or sirtuins, are a family of enzymes that catalyze NAD(+)-dependent deacetylation reactions and can also process ribosyltransferase, demalonylase, and desuccinylase activities. More than 40 crystal structures of sirtuins have been determined, alone or in various liganded forms. These high-resolution architectural details lay the foundation for understanding the molecular mechanisms of catalysis, regulation, substrate specificity, and inhibition of sirtuins. In this minireview, we summarize these structural features and discuss their implications for understanding sirtuin function.

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Year:  2012        PMID: 23086949      PMCID: PMC3522243          DOI: 10.1074/jbc.R112.372300

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  52 in total

1.  The silencing protein SIR2 and its homologs are NAD-dependent protein deacetylases.

Authors:  J Landry; A Sutton; S T Tafrov; R C Heller; J Stebbins; L Pillus; R Sternglanz
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

2.  Structure of the histone deacetylase SIRT2.

Authors:  M S Finnin; J R Donigian; N P Pavletich
Journal:  Nat Struct Biol       Date:  2001-07

Review 3.  Sirtuin catalysis and regulation.

Authors:  Jessica L Feldman; Kristin E Dittenhafer-Reed; John M Denu
Journal:  J Biol Chem       Date:  2012-10-18       Impact factor: 5.157

4.  Silent information regulator 2 family of NAD- dependent histone/protein deacetylases generates a unique product, 1-O-acetyl-ADP-ribose.

Authors:  K G Tanner; J Landry; R Sternglanz; J M Denu
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

5.  Crystal structure of transhydrogenase domain III at 1.2 A resolution.

Authors:  G S Prasad; V Sridhar; M Yamaguchi; Y Hatefi; C D Stout
Journal:  Nat Struct Biol       Date:  1999-12

6.  Chemistry of gene silencing: the mechanism of NAD+-dependent deacetylation reactions.

Authors:  A A Sauve; I Celic; J Avalos; H Deng; J D Boeke; V L Schramm
Journal:  Biochemistry       Date:  2001-12-25       Impact factor: 3.162

7.  A phylogenetically conserved NAD+-dependent protein deacetylase activity in the Sir2 protein family.

Authors:  J S Smith; C B Brachmann; I Celic; M A Kenna; S Muhammad; V J Starai; J L Avalos; J C Escalante-Semerena; C Grubmeyer; C Wolberger; J D Boeke
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

8.  Crystal structure of a SIR2 homolog-NAD complex.

Authors:  J Min; J Landry; R Sternglanz; R M Xu
Journal:  Cell       Date:  2001-04-20       Impact factor: 41.582

9.  The interaction of Alba, a conserved archaeal chromatin protein, with Sir2 and its regulation by acetylation.

Authors:  Stephen D Bell; Catherine H Botting; Benjamin N Wardleworth; Stephen P Jackson; Malcolm F White
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

10.  Structural identification of 2'- and 3'-O-acetyl-ADP-ribose as novel metabolites derived from the Sir2 family of beta -NAD+-dependent histone/protein deacetylases.

Authors:  Michael D Jackson; John M Denu
Journal:  J Biol Chem       Date:  2002-03-13       Impact factor: 5.157

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  45 in total

1.  Development of a Novel Histone Deacetylase-Targeted Near-Infrared Probe for Hepatocellular Carcinoma Imaging and Fluorescence Image-Guided Surgery.

Authors:  Chu Tang; Yang Du; Qian Liang; Zhen Cheng; Jie Tian
Journal:  Mol Imaging Biol       Date:  2020-06       Impact factor: 3.488

2.  The diversity of histone versus nonhistone sirtuin substrates.

Authors:  Paloma Martínez-Redondo; Alejandro Vaquero
Journal:  Genes Cancer       Date:  2013-03

Review 3.  Acylation of Biomolecules in Prokaryotes: a Widespread Strategy for the Control of Biological Function and Metabolic Stress.

Authors:  Kristy L Hentchel; Jorge C Escalante-Semerena
Journal:  Microbiol Mol Biol Rev       Date:  2015-07-15       Impact factor: 11.056

Review 4.  Structure, mechanism, and inhibition of the zinc-dependent histone deacetylases.

Authors:  Nicholas J Porter; David W Christianson
Journal:  Curr Opin Struct Biol       Date:  2019-02-08       Impact factor: 6.809

5.  Entropy as a Driver of Selectivity for Inhibitor Binding to Histone Deacetylase 6.

Authors:  Nicholas J Porter; Florence F Wagner; David W Christianson
Journal:  Biochemistry       Date:  2018-05-18       Impact factor: 3.162

6.  Histone Deacetylase 6-Selective Inhibitors and the Influence of Capping Groups on Hydroxamate-Zinc Denticity.

Authors:  Nicholas J Porter; Jeremy D Osko; Daniela Diedrich; Thomas Kurz; Jacob M Hooker; Finn K Hansen; David W Christianson
Journal:  J Med Chem       Date:  2018-08-17       Impact factor: 7.446

Review 7.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

Authors:  Francois-Xavier Theillet; Andres Binolfi; Tamara Frembgen-Kesner; Karan Hingorani; Mohona Sarkar; Ciara Kyne; Conggang Li; Peter B Crowley; Lila Gierasch; Gary J Pielak; Adrian H Elcock; Anne Gershenson; Philipp Selenko
Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

8.  Nicotinamide Suppresses the DNA Damage Sensitivity of Saccharomyces cerevisiae Independently of Sirtuin Deacetylases.

Authors:  Anthony Rössl; Amanda Bentley-DeSousa; Yi-Chieh Tseng; Christine Nwosu; Michael Downey
Journal:  Genetics       Date:  2016-08-15       Impact factor: 4.562

9.  Sirtuin Deacetylation Mechanism and Catalytic Role of the Dynamic Cofactor Binding Loop.

Authors:  Yawei Shi; Yanzi Zhou; Shenglong Wang; Yingkai Zhang
Journal:  J Phys Chem Lett       Date:  2013-02-07       Impact factor: 6.475

10.  Biochemistry. Red wine, toast of the town (again).

Authors:  Hua Yuan; Ronen Marmorstein
Journal:  Science       Date:  2013-03-08       Impact factor: 47.728

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