Literature DB >> 24120939

Structural and functional analysis of human SIRT1.

Andrew M Davenport1, Ferdinand M Huber1, André Hoelz2.   

Abstract

SIRT1 is a NAD(+)-dependent deacetylase that plays important roles in many cellular processes. SIRT1 activity is uniquely controlled by a C-terminal regulatory segment (CTR). Here we present crystal structures of the catalytic domain of human SIRT1 in complex with the CTR in an open apo form and a closed conformation in complex with a cofactor and a pseudo-substrate peptide. The catalytic domain adopts the canonical sirtuin fold. The CTR forms a β hairpin structure that complements the β sheet of the NAD(+)-binding domain, covering an essentially invariant hydrophobic surface. The apo form adopts a distinct open conformation, in which the smaller subdomain of SIRT1 undergoes a rotation with respect to the larger NAD(+)-binding subdomain. A biochemical analysis identifies key residues in the active site, an inhibitory role for the CTR, and distinct structural features of the CTR that mediate binding and inhibition of the SIRT1 catalytic domain.
© 2013. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  ADPR; GST; MALS; SEC; SSRL; Sir2; Stanford Synchrotron Radiation Lightsource; X-ray crystallography; adenosine diphosphoribose; conformational plasticity; enzyme peptide substrate interaction; enzyme regulation; glutathione S-transferase; multiangle light scattering; mutational analysis; silent information regulator 2; size-exclusion chromatography

Mesh:

Substances:

Year:  2013        PMID: 24120939      PMCID: PMC4211926          DOI: 10.1016/j.jmb.2013.10.009

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  63 in total

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Authors:  José A García-Salcedo; Purificación Gijón; Derek P Nolan; Patricia Tebabi; Etienne Pays
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

3.  Acetylation-dependent ADP-ribosylation by Trypanosoma brucei Sir2.

Authors:  Terri M Kowieski; Susan Lee; John M Denu
Journal:  J Biol Chem       Date:  2007-12-27       Impact factor: 5.157

4.  Insights into the sirtuin mechanism from ternary complexes containing NAD+ and acetylated peptide.

Authors:  Kevin G Hoff; José L Avalos; Kristin Sens; Cynthia Wolberger
Journal:  Structure       Date:  2006-08       Impact factor: 5.006

5.  The 2.5 Å crystal structure of the SIRT1 catalytic domain bound to nicotinamide adenine dinucleotide (NAD+) and an indole (EX527 analogue) reveals a novel mechanism of histone deacetylase inhibition.

Authors:  Xun Zhao; Dagart Allison; Bradley Condon; Feiyu Zhang; Tarun Gheyi; Aiping Zhang; Sheela Ashok; Marijane Russell; Iain MacEwan; Yuewei Qian; James A Jamison; John Gately Luz
Journal:  J Med Chem       Date:  2013-01-29       Impact factor: 7.446

6.  Sir2 regulation by nicotinamide results from switching between base exchange and deacetylation chemistry.

Authors:  Anthony A Sauve; Vern L Schramm
Journal:  Biochemistry       Date:  2003-08-12       Impact factor: 3.162

7.  Structural basis for the NAD-dependent deacetylase mechanism of Sir2.

Authors:  Jeong-Ho Chang; Hyun-Chul Kim; Kwang-Yeon Hwang; Joon-Won Lee; Stephen P Jackson; Stephen D Bell; Yunje Cho
Journal:  J Biol Chem       Date:  2002-06-28       Impact factor: 5.157

8.  Structural basis for allosteric stimulation of Sir2 activity by Sir4 binding.

Authors:  Hao-Chi Hsu; Chia-Lin Wang; Mingzhu Wang; Na Yang; Zhi Chen; Rolf Sternglanz; Rui-Ming Xu
Journal:  Genes Dev       Date:  2013-01-01       Impact factor: 11.361

9.  Ex-527 inhibits Sirtuins by exploiting their unique NAD+-dependent deacetylation mechanism.

Authors:  Melanie Gertz; Frank Fischer; Giang Thi Tuyet Nguyen; Mahadevan Lakshminarasimhan; Mike Schutkowski; Michael Weyand; Clemens Steegborn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-09       Impact factor: 11.205

10.  Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase.

Authors:  Jintang Du; Yeyun Zhou; Xiaoyang Su; Jiu Jiu Yu; Saba Khan; Hong Jiang; Jungwoo Kim; Jimin Woo; Jun Huyn Kim; Brian Hyun Choi; Bin He; Wei Chen; Sheng Zhang; Richard A Cerione; Johan Auwerx; Quan Hao; Hening Lin
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

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  54 in total

1.  Propofol inhibits SIRT2 deacetylase through a conformation-specific, allosteric site.

Authors:  Brian P Weiser; Roderic G Eckenhoff
Journal:  J Biol Chem       Date:  2015-02-09       Impact factor: 5.157

2.  An Insulin-Responsive Sensor in the SIRT1 Disordered Region Binds DBC1 and PACS-2 to Control Enzyme Activity.

Authors:  Troy C Krzysiak; Laurel Thomas; You-Jin Choi; Sylvain Auclair; Yiqi Qian; Shan Luan; Stephanie M Krasnow; Laura L Thomas; Leonardus M I Koharudin; Panayiotis V Benos; Daniel L Marks; Angela M Gronenborn; Gary Thomas
Journal:  Mol Cell       Date:  2018-11-08       Impact factor: 17.970

Review 3.  Sirtuin activators and inhibitors: Promises, achievements, and challenges.

Authors:  Han Dai; David A Sinclair; James L Ellis; Clemens Steegborn
Journal:  Pharmacol Ther       Date:  2018-03-22       Impact factor: 12.310

4.  Probing the mechanism of SIRT1 activation by a 1,4-dihydropyridine.

Authors:  Debashri Manna; Rajabrata Bhuyan; Rita Ghosh
Journal:  J Mol Model       Date:  2018-11-17       Impact factor: 1.810

5.  Investigating the Sensitivity of NAD+-dependent Sirtuin Deacylation Activities to NADH.

Authors:  Andreas S Madsen; Christian Andersen; Mohammad Daoud; Kristin A Anderson; Jonas S Laursen; Saswati Chakladar; Frank K Huynh; Ana R Colaço; Donald S Backos; Peter Fristrup; Matthew D Hirschey; Christian A Olsen
Journal:  J Biol Chem       Date:  2016-02-09       Impact factor: 5.157

6.  N-Acylethanolamines Bind to SIRT6.

Authors:  Minna Rahnasto-Rilla; Tarja Kokkola; Elina Jarho; Maija Lahtela-Kakkonen; Ruin Moaddel
Journal:  Chembiochem       Date:  2015-11-26       Impact factor: 3.164

Review 7.  Role of Silent Information Regulator 1 (SIRT1) in Regulating Oxidative Stress and Inflammation.

Authors:  Vivek Singh; Saba Ubaid
Journal:  Inflammation       Date:  2020-10       Impact factor: 4.092

8.  Mechanism of Sirt1 NAD+-dependent Protein Deacetylase Inhibition by Cysteine S-Nitrosation.

Authors:  Kelsey S Kalous; Sarah L Wynia-Smith; Michael D Olp; Brian C Smith
Journal:  J Biol Chem       Date:  2016-10-18       Impact factor: 5.157

9.  Discovery of 5-Benzylidene-2-phenyl-1,3-dioxane-4,6-diones as Highly Potent and Selective SIRT1 Inhibitors.

Authors:  Chunpu Li; Sha-Sha Hu; Lisheng Yang; Min Wang; Jian-Dong Long; Bing Wang; Haozhen Han; Haoran Zhu; Sen Zhao; Jing-Gen Liu; Dongxiang Liu; Hong Liu
Journal:  ACS Med Chem Lett       Date:  2021-03-01       Impact factor: 4.345

10.  CSAG2 is a cancer-specific activator of SIRT1.

Authors:  Xu Yang; Patrick Ryan Potts
Journal:  EMBO Rep       Date:  2020-08-05       Impact factor: 8.807

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