Literature DB >> 19756606

Gene expression dynamics in randomly varying environments.

Michael W Smiley1, Stephen R Proulx2.   

Abstract

A simple model of gene regulation in response to stochastically changing environmental conditions is developed and analyzed. The model consists of a differential equation driven by a continuous time 2-state Markov process. The density function of the resulting process converges to a beta distribution. We show that the moments converge to their stationary values exponentially in time. Simulations of a two-stage process where protein production depends on mRNA concentrations are also presented demonstrating that protein concentration tracks the environment whenever the rate of protein turnover is larger than the rate of environmental change. Single-celled organisms are therefore expected to have relatively high mRNA and protein turnover rates for genes that respond to environmental fluctuations.

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Year:  2009        PMID: 19756606     DOI: 10.1007/s00285-009-0298-z

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  23 in total

1.  How to reconstruct a large genetic network from n gene perturbations in fewer than n(2) easy steps.

Authors:  A Wagner
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

Review 2.  Perspective: Evolution and detection of genetic robustness.

Authors:  J Arjan G M de Visser; Joachim Hermisson; Günter P Wagner; Lauren Ancel Meyers; Homayoun Bagheri-Chaichian; Jeffrey L Blanchard; Lin Chao; James M Cheverud; Santiago F Elena; Walter Fontana; Greg Gibson; Thomas F Hansen; David Krakauer; Richard C Lewontin; Charles Ofria; Sean H Rice; George von Dassow; Andreas Wagner; Michael C Whitlock
Journal:  Evolution       Date:  2003-09       Impact factor: 3.694

Review 3.  The evolution of genetic regulatory systems in bacteria.

Authors:  Harley H McAdams; Balaji Srinivasan; Adam P Arkin
Journal:  Nat Rev Genet       Date:  2004-03       Impact factor: 53.242

Review 4.  Messenger RNA turnover in eukaryotes: pathways and enzymes.

Authors:  Sylke Meyer; Claudia Temme; Elmar Wahle
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Jul-Aug       Impact factor: 8.250

5.  Phenotypic diversity, population growth, and information in fluctuating environments.

Authors:  Edo Kussell; Stanislas Leibler
Journal:  Science       Date:  2005-08-25       Impact factor: 47.728

6.  Network thinking in ecology and evolution.

Authors:  Stephen R Proulx; Daniel E L Promislow; Patrick C Phillips
Journal:  Trends Ecol Evol       Date:  2005-06       Impact factor: 17.712

Review 7.  Transcriptional regulatory networks in bacteria: from input signals to output responses.

Authors:  Aswin S N Seshasayee; Paul Bertone; Gillian M Fraser; Nicholas M Luscombe
Journal:  Curr Opin Microbiol       Date:  2006-08-30       Impact factor: 7.934

8.  Modeling stochastic gene expression: implications for haploinsufficiency.

Authors:  D L Cook; A N Gerber; S J Tapscott
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

9.  Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.

Authors:  John R S Newman; Sina Ghaemmaghami; Jan Ihmels; David K Breslow; Matthew Noble; Joseph L DeRisi; Jonathan S Weissman
Journal:  Nature       Date:  2006-05-14       Impact factor: 49.962

Review 10.  Post-transcriptional gene regulation: from genome-wide studies to principles.

Authors:  R E Halbeisen; A Galgano; T Scherrer; A P Gerber
Journal:  Cell Mol Life Sci       Date:  2008-03       Impact factor: 9.261

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  4 in total

1.  Solving inverse problems for biological models using the collage method for differential equations.

Authors:  V Capasso; H E Kunze; D La Torre; E R Vrscay
Journal:  J Math Biol       Date:  2012-02-24       Impact factor: 2.259

Review 2.  Stochastic Hybrid Systems in Cellular Neuroscience.

Authors:  Paul C Bressloff; James N Maclaurin
Journal:  J Math Neurosci       Date:  2018-08-22       Impact factor: 1.300

3.  Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data.

Authors:  Jong Kyoung Kim; John C Marioni
Journal:  Genome Biol       Date:  2013-01-28       Impact factor: 13.583

4.  Stochastic models of gene transcription with upstream drives: exact solution and sample path characterization.

Authors:  Justine Dattani; Mauricio Barahona
Journal:  J R Soc Interface       Date:  2017-01       Impact factor: 4.118

  4 in total

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