| Literature DB >> 19725997 |
Carla Kairupan1, Rodney J Scott.
Abstract
The correction of exogenous and endogenous environmental insult to DNA involves a series of DNA repair mechanisms that reduce the likelihood of mutation accumulation and hence an increased probability of tumour development. The mechanisms underlying the process of base excision repair are relatively well understood and are placed in context with how deterioration of this process is associated with an increased risk of malignancy.Entities:
Year: 2007 PMID: 19725997 PMCID: PMC2736980 DOI: 10.1186/1897-4287-5-4-199
Source DB: PubMed Journal: Hered Cancer Clin Pract ISSN: 1731-2302 Impact factor: 2.857
DNA glycosylases involved in BER in human (modified from refs. [12,18])
| MBD4 (also called MED1) | No | 3q21–22 | Nuclei | G:T mismatches within methylated and unmethylated CpG sites. Can also remove uracil or 5-fluorouracil in G:U mismatches | [ |
| MPG (also called AAG, ANPG, or MID1) | No | 16p13.3 | Nuclei | 3-methyladenine, 7-methyl-guanine, hypo-xanthine, ethenoA | [ |
| SMUG1 | No | 12q13.3 | Nuclei | Uracil (U) in single or double strand DNA, with a preference for single strand DNA | [ |
| TDG | No | 12q24.1 | Nuclei | G/T, C/T, and T/T mispairs. Also uracil and 5-bromouracil mispairs with guanine | [ |
| UDG2 | No | 5 | Nuclei | U:A mismatch | [ |
| UNG1 (also called DGU, UNG15, UDG1 or UDG1M) | No | 12q24.1 | Mitochondria | Uracil from misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine | [ |
| UNG2 (also called UDG1A or UDG1N) | No | 12q24.1 | Nuclei | Uracil from misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine | [ |
| Yes (weak) | 1p32.1–34.3 | Nuclei and mitochondria | A:8-oxoG and 2-OH-A:G | [ | |
| NEIL1 (also called NEH1or FPG1) | Yes | 15q22–24 | Nuclei | Oxidized pyrimidines, such as thymine glycol, formamidopyrimidine (Fapy) and 5-hydroxyuracil. Also has a marginal activity towards 8-oxoguanine | [ |
| NTH1 (also called NTHL1 or OCTS3) | Yes | 16p13.2–13.13 | Nuclei and mitochondria | Damaged DNA at cytosines, thymines and guanines | [ |
| OGG1 (also called MMH, MUTM, or OGH1) | Yes | 3p26.2 | Nuclei and mitochondria | 8-oxoG:C, 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylforma-midopyrimidine (FAPY) | [ |
Figure 1Diagram of the functional domains of [107]).
Figure 2Base pairing properties of oxo8G residues in DNA.
Figure 3Different pathways for repairing damaged G residues caused by reactive oxygen species (adapted from [123]).
List of reported MUTYH variants
| Nonsense | R83X | [ |
| Y90X | [ | |
| E182X | [ | |
| Q196X | ||
| R233X | ||
| Q300X | [ | |
| E466X | [ | |
| Insertions/deletions | 199delGT | |
| 252delG | ||
| 263insAG | ||
| 379delC | ||
| 817delG | ||
| 1059insC | ||
| 1103–1105delC | ||
| 1186–1187insGG | ||
| 1419delC | ||
| Splice | IVS1(36)+1G>A | [ |
| IVS1(36)+5G.C | [ | |
| IVS4(347)-1G>C | ||
| IVS4(347)-1G>A | ||
| IVS5(421)-1G>C | ||
| IVS8(649)-1G>A | ||
| IVS10(891)+3A>C | ||
| IVS10(892)-2A>G | [ | |
| IVS12(1145)-2A>G | ||
| IVS13(1281)+25del30 | [ | |
| IVS15(1476)+2T>C | ||
| Missense and inframe ins/dels | M15V | |
| P18L | [ | |
| V22M | [ | |
| G25D | [ | |
| V61E | [ | |
| D91N | [ | |
| Y114H | ||
| W117R | ||
| 137insIW | ||
| P143L | ||
| D147H | ||
| Y165C | ||
| Y166S | ||
| R168H | ||
| R168L | ||
| R68C | ||
| R171Q | ||
| G175E | ||
| I209V | ||
| V220M | ||
| R227W | ||
| R231C | ||
| R231H | ||
| V232F | ||
| R260Q | ||
| R260W | ||
| M269V | ||
| C276W | ||
| P281L | ||
| R295C | ||
| Q324H | [ | |
| Q324R | ||
| F344Y | ||
| P345T | ||
| P366T | [ | |
| L374P | ||
| G382D | ||
| P391S | ||
| P391L | ||
| Q400R | ||
| A405T | ||
| L406M | ||
| R412C | ||
| R423P | [ | |
| R423Q | [ | |
| R423R | [ | |
| A459D | ||
| A459T | ||
| 1391delAGG | ||
| 1395delGGA (466delE) | ||
| V479F | ||
| Q484H | ||
| S501F | [ | |
| P502L | ||