Literature DB >> 19725541

Solvent fluctuations drive the hole transfer in DNA: a mixed quantum-classical study.

Tomás Kubar1, Ulrich Kleinekathöfer, Marcus Elstner.   

Abstract

We studied the hole transfer across adenine bridges in double-stranded DNA by means of a multiscale approach, propagating the hole in the framework of time-dependent DFT coupled to classical molecular dynamics simulation using a QM/MM scheme. The hole transfer in DNA is codetermined by the large fluctuations of site energies on the order of 0.4 eV, induced by the solvent degrees of freedom. These fluctuations lead to charge-transfer active conformations with large transfer efficiency, which are characterized by a favorable alignment of site energies along the DNA strand. This reduces the barrier for the hole transfer dramatically. Consequently, we find that a charge hopping mechanism is operative already for short bridges with fewer than four adenines, in contrast to the charge-transfer models assuming static DNA structures, where only tunneling occurs. The solvent fluctuations introduce a significant correlation between neighboring sites, enhancing the charge-transfer rate, while the fluctuation of electronic couplings has only a minor impact on the charge-transfer characteristics. Our results emphasize the importance of an accurate description of solvent effects as well as proper sampling, and it is suggested that charge transfer in DNA is gated by the dynamics of solvent.

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Year:  2009        PMID: 19725541     DOI: 10.1021/jp9073587

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  11 in total

1.  Juxtaposing density matrix and classical path-based wave packet dynamics.

Authors:  Mortaza Aghtar; Jörg Liebers; Johan Strümpfer; Klaus Schulten; Ulrich Kleinekathöfer
Journal:  J Chem Phys       Date:  2012-06-07       Impact factor: 3.488

Review 2.  A hybrid approach to simulation of electron transfer in complex molecular systems.

Authors:  Tomáš Kubař; Marcus Elstner
Journal:  J R Soc Interface       Date:  2013-07-24       Impact factor: 4.118

3.  The effect of correlated bath fluctuations on exciton transfer.

Authors:  Johan Strümpfer; Klaus Schulten
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

4.  Biological charge transfer via flickering resonance.

Authors:  Yuqi Zhang; Chaoren Liu; Alexander Balaeff; Spiros S Skourtis; David N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-25       Impact factor: 11.205

5.  Single-step charge transport through DNA over long distances.

Authors:  Joseph C Genereux; Stephanie M Wuerth; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2011-02-24       Impact factor: 15.419

6.  Theory and Simulation of the Environmental Effects on FMO Electronic Transitions.

Authors:  Carsten Olbrich; Johan Strümpfer; Klaus Schulten; Ulrich Kleinekathöfer
Journal:  J Phys Chem Lett       Date:  2011-06-30       Impact factor: 6.475

7.  Quest for spatially correlated fluctuations in the FMO light-harvesting complex.

Authors:  Carsten Olbrich; Johan Strümpfer; Klaus Schulten; Ulrich Kleinekathöfer
Journal:  J Phys Chem B       Date:  2010-12-10       Impact factor: 2.991

8.  Nucleic Acid Charge Transfer: Black, White and Gray.

Authors:  Ravindra Venkatramani; Shahar Keinan; Alexander Balaeff; David N Beratan
Journal:  Coord Chem Rev       Date:  2011-04-01       Impact factor: 22.315

9.  Length-independent transport rates in biomolecules by quantum mechanical unfurling.

Authors:  Ariel D Levine; Michael Iv; Uri Peskin
Journal:  Chem Sci       Date:  2015-11-20       Impact factor: 9.825

10.  Voltage-induced long-range coherent electron transfer through organic molecules.

Authors:  Karen Michaeli; David N Beratan; David H Waldeck; Ron Naaman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-07       Impact factor: 11.205

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