Literature DB >> 19712041

Systematic mapping of genetic interaction networks.

Scott J Dixon1, Michael Costanzo, Anastasia Baryshnikova, Brenda Andrews, Charles Boone.   

Abstract

Genetic interactions influencing a phenotype of interest can be identified systematically using libraries of genetic tools that perturb biological systems in a defined manner. Systematic screens conducted in the yeast Saccharomyces cerevisiae have identified thousands of genetic interactions and provided insight into the global structure of biological networks. Techniques enabling systematic genetic interaction mapping have been extended to other single-celled organisms, the bacteria Escherichia coli and the yeast Schizosaccharomyces pombe, opening the way to comparative investigations of interaction networks. Genetic interaction screens in Caenorhabditis elegans, Drosophila melanogaster, and mammalian models are helping to improve our understanding of metazoan-specific signaling pathways. Together, our emerging knowledge of the genetic wiring diagrams of eukaryotic and prokaryotic cells is providing a new understanding of the relationship between genotype and phenotype.

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Year:  2009        PMID: 19712041     DOI: 10.1146/annurev.genet.39.073003.114751

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  136 in total

1.  Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs.

Authors:  Sara Sharifpoor; Dewald van Dyk; Michael Costanzo; Anastasia Baryshnikova; Helena Friesen; Alison C Douglas; Ji-Young Youn; Benjamin VanderSluis; Chad L Myers; Balázs Papp; Charles Boone; Brenda J Andrews
Journal:  Genome Res       Date:  2012-01-26       Impact factor: 9.043

Review 2.  Reverse genetics in eukaryotes.

Authors:  Serge Hardy; Vincent Legagneux; Yann Audic; Luc Paillard
Journal:  Biol Cell       Date:  2010-10       Impact factor: 4.458

3.  Whole-genome profiling of mutagenesis in Caenorhabditis elegans.

Authors:  Stephane Flibotte; Mark L Edgley; Iasha Chaudhry; Jon Taylor; Sarah E Neil; Aleksandra Rogula; Rick Zapf; Martin Hirst; Yaron Butterfield; Steven J Jones; Marco A Marra; Robert J Barstead; Donald G Moerman
Journal:  Genetics       Date:  2010-05-03       Impact factor: 4.562

4.  Disease allele-dependent small-molecule sensitivities in blood cells from monogenic diabetes.

Authors:  Stanley Y Shaw; David M Blodgett; Maggie S Ma; Elizabeth C Westly; Paul A Clemons; Aravind Subramanian; Stuart L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-23       Impact factor: 11.205

5.  Massively parallel high-order combinatorial genetics in human cells.

Authors:  Alan S L Wong; Gigi C G Choi; Allen A Cheng; Oliver Purcell; Timothy K Lu
Journal:  Nat Biotechnol       Date:  2015-08-17       Impact factor: 54.908

Review 6.  Methods for biological data integration: perspectives and challenges.

Authors:  Vladimir Gligorijević; Nataša Pržulj
Journal:  J R Soc Interface       Date:  2015-11-06       Impact factor: 4.118

7.  Mapping a diversity of genetic interactions in yeast.

Authors:  Jolanda van Leeuwen; Charles Boone; Brenda J Andrews
Journal:  Curr Opin Syst Biol       Date:  2017-08-12

Review 8.  Drosophila RNAi screening in a postgenomic world.

Authors:  Chris Bakal
Journal:  Brief Funct Genomics       Date:  2011-07-12       Impact factor: 4.241

9.  Frizzled 2 and frizzled 7 function redundantly in convergent extension and closure of the ventricular septum and palate: evidence for a network of interacting genes.

Authors:  Huimin Yu; Xin Ye; Nini Guo; Jeremy Nathans
Journal:  Development       Date:  2012-10-24       Impact factor: 6.868

10.  Genetic regulatory network motifs constrain adaptation through curvature in the landscape of mutational (co)variance.

Authors:  Tyler D Hether; Paul A Hohenlohe
Journal:  Evolution       Date:  2013-12-04       Impact factor: 3.694

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