Literature DB >> 19706519

Measurement of amyloid fibril mass-per-length by tilted-beam transmission electron microscopy.

Bo Chen1, Kent R Thurber, Frank Shewmaker, Reed B Wickner, Robert Tycko.   

Abstract

We demonstrate that accurate values of mass-per-length (MPL), which serve as strong constraints on molecular structure, can be determined for amyloid fibrils by quantification of intensities in dark-field electron microscope images obtained in the tilted-beam mode of a transmission electron microscope. MPL values for fibrils formed by residues 218-289 of the HET-s fungal prion protein, for 2-fold- and 3-fold-symmetric fibrils formed by the 40-residue beta-amyloid peptide, and for fibrils formed by the yeast prion protein Sup35NM are in good agreement with previous results from scanning transmission electron microscopy. Results for fibrils formed by the yeast prion protein Rnq1, for which the MPL value has not been previously reported, support an in-register parallel beta-sheet structure, with one Rnq1 molecule per 0.47-nm beta-sheet repeat spacing. Since tilted-beam dark-field images can be obtained on many transmission electron microscopes, this work should facilitate MPL determination by a large number of research groups engaged in studies of amyloid fibrils and similar supramolecular assemblies.

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Year:  2009        PMID: 19706519      PMCID: PMC2732815          DOI: 10.1073/pnas.0907821106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Rnq1: an epigenetic modifier of protein function in yeast.

Authors:  N Sondheimer; S Lindquist
Journal:  Mol Cell       Date:  2000-01       Impact factor: 17.970

Review 2.  Structure and mass analysis by scanning transmission electron microscopy.

Authors:  S A Müller; A Engel
Journal:  Micron       Date:  2001-01       Impact factor: 2.251

3.  Evidence for the prion hypothesis: induction of the yeast [PSI+] factor by in vitro- converted Sup35 protein.

Authors:  H E Sparrer; A Santoso; F C Szoka; J S Weissman
Journal:  Science       Date:  2000-07-28       Impact factor: 47.728

4.  The HET-s prion protein of the filamentous fungus Podospora anserina aggregates in vitro into amyloid-like fibrils.

Authors:  Suzana Dos Reis; Bénédicte Coulary-Salin; Vincent Forge; Ioan Lascu; Joël Bégueret; Sven J Saupe
Journal:  J Biol Chem       Date:  2001-12-03       Impact factor: 5.157

5.  Supramolecular structural constraints on Alzheimer's beta-amyloid fibrils from electron microscopy and solid-state nuclear magnetic resonance.

Authors:  Oleg N Antzutkin; Richard D Leapman; John J Balbach; Robert Tycko
Journal:  Biochemistry       Date:  2002-12-24       Impact factor: 3.162

6.  Architecture of Ure2p prion filaments: the N-terminal domains form a central core fiber.

Authors:  Ulrich Baxa; Kimberly L Taylor; Joseph S Wall; Martha N Simon; Naiqian Cheng; Reed B Wickner; Alasdair C Steven
Journal:  J Biol Chem       Date:  2003-08-12       Impact factor: 5.157

7.  Molecular weight determination by scanning transmission electron microscopy.

Authors:  A Engel
Journal:  Ultramicroscopy       Date:  1978       Impact factor: 2.689

8.  Studies on the in vitro assembly of a beta 1-40: implications for the search for a beta fibril formation inhibitors.

Authors:  C S Goldsbury; S Wirtz; S A Müller; S Sunderji; P Wicki; U Aebi; P Frey
Journal:  J Struct Biol       Date:  2000-06       Impact factor: 2.867

9.  Structure of tobacco mosaic virus at 3.6 A resolution: implications for assembly.

Authors:  K Namba; G Stubbs
Journal:  Science       Date:  1986-03-21       Impact factor: 47.728

10.  Protein-only transmission of three yeast prion strains.

Authors:  Chih-Yen King; Ruben Diaz-Avalos
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

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  62 in total

1.  Amyloid of the Candida albicans Ure2p prion domain is infectious and has an in-register parallel β-sheet structure.

Authors:  Abbi Engel; Frank Shewmaker; Herman K Edskes; Fred Dyda; Reed B Wickner
Journal:  Biochemistry       Date:  2011-06-15       Impact factor: 3.162

2.  Antiparallel β-sheet architecture in Iowa-mutant β-amyloid fibrils.

Authors:  Wei Qiang; Wai-Ming Yau; Yongquan Luo; Mark P Mattson; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-08       Impact factor: 11.205

3.  Size distribution of amyloid nanofibrils.

Authors:  Raffaela Cabriolu; Dimo Kashchiev; Stefan Auer
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

4.  A yeast toxic mutant of HET-s((218-289)) prion displays alternative intermediates of amyloidogenesis.

Authors:  Karine Berthelot; Sophie Lecomte; Julie Géan; Françoise Immel; Christophe Cullin
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

5.  Repeat domains of melanosome matrix protein Pmel17 orthologs form amyloid fibrils at the acidic melanosomal pH.

Authors:  Ryan P McGlinchey; Frank Shewmaker; Kan-Nian Hu; Peter McPhie; Robert Tycko; Reed B Wickner
Journal:  J Biol Chem       Date:  2010-12-10       Impact factor: 5.157

Review 6.  Amyloid structure and assembly: insights from scanning transmission electron microscopy.

Authors:  Claire Goldsbury; Ulrich Baxa; Martha N Simon; Alasdair C Steven; Andreas Engel; Joseph S Wall; Ueli Aebi; Shirley A Müller
Journal:  J Struct Biol       Date:  2010-09-22       Impact factor: 2.867

Review 7.  Prion amyloid structure explains templating: how proteins can be genes.

Authors:  Reed B Wickner; Frank Shewmaker; Herman Edskes; Dmitry Kryndushkin; Julie Nemecek; Ryan McGlinchey; David Bateman; Chia-Lin Winchester
Journal:  FEMS Yeast Res       Date:  2010-12       Impact factor: 2.796

8.  Study of Amyloids Using Yeast.

Authors:  Reed B Wickner; Dmitry Kryndushkin; Frank Shewmaker; Ryan McGlinchey; Herman K Edskes
Journal:  Methods Mol Biol       Date:  2018

9.  Structural and dynamical characterization of tubular HIV-1 capsid protein assemblies by solid state nuclear magnetic resonance and electron microscopy.

Authors:  Bo Chen; Robert Tycko
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

Review 10.  Prions in yeast.

Authors:  Susan W Liebman; Yury O Chernoff
Journal:  Genetics       Date:  2012-08       Impact factor: 4.562

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