Literature DB >> 19706437

Nonlinear electrophoretic response yields a unique parameter for separation of biomolecules.

Joel Pel1, David Broemeling, Laura Mai, Hau-Ling Poon, Giorgia Tropini, René L Warren, Robert A Holt, Andre Marziali.   

Abstract

We demonstrate a unique parameter for biomolecule separation that results from the nonlinear response of long, charged polymers to electrophoretic fields and apply it to extraction and concentration of nucleic acids from samples that perform poorly under conventional methods. Our method is based on superposition of synchronous, time-varying electrophoretic fields, which can generate net drift of charged molecules even when the time-averaged molecule displacement generated by each field individually is zero. Such drift can only occur for molecules, such as DNA, whose motive response to electrophoretic fields is nonlinear. Consequently, we are able to concentrate DNA while rejecting high concentrations of contaminants. We demonstrate one application of this method by extracting DNA from challenging samples originating in the Athabasca oil sands.

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Year:  2009        PMID: 19706437      PMCID: PMC2728113          DOI: 10.1073/pnas.0907402106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

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Journal:  Electrophoresis       Date:  2000-05       Impact factor: 3.535

2.  PCAP: a whole-genome assembly program.

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Review 5.  The metagenomics of soil.

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Review 6.  Strategies for accessing soil metagenome for desired applications.

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Journal:  Biotechnol Adv       Date:  2008-08-22       Impact factor: 14.227

7.  Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium.

Authors:  Robert A Sanford; James R Cole; James M Tiedje
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8.  Functional characterization of a catabolic plasmid from polychlorinated- biphenyl-degrading Rhodococcus sp. strain RHA1.

Authors:  René Warren; William W L Hsiao; Hisashi Kudo; Matt Myhre; Manisha Dosanjh; Anca Petrescu; Hiroyuki Kobayashi; Satoru Shimizu; Keisuke Miyauchi; Eiji Masai; George Yang; Jeff M Stott; Jacquie E Schein; Heesun Shin; Jaswinder Khattra; Duane Smailus; Yaron S Butterfield; Asim Siddiqui; Robert Holt; Marco A Marra; Steven J M Jones; William W Mohn; Fiona S L Brinkman; Masao Fukuda; Julian Davies; Lindsay D Eltis
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

9.  Measurement of protein using bicinchoninic acid.

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10.  Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris.

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  16 in total

1.  Size Does Matter: Application-driven Approaches for Soil Metagenomics.

Authors:  Kavita S Kakirde; Larissa C Parsley; Mark R Liles
Journal:  Soil Biol Biochem       Date:  2010-11-01       Impact factor: 7.609

Review 2.  Culture-independent discovery of natural products from soil metagenomes.

Authors:  Micah Katz; Bradley M Hover; Sean F Brady
Journal:  J Ind Microbiol Biotechnol       Date:  2015-11-19       Impact factor: 3.346

Review 3.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

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6.  The potential of TaqMan Array Cards for detection of multiple biological agents by real-time PCR.

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Journal:  PLoS One       Date:  2012-04-23       Impact factor: 3.240

7.  Winnowing DNA for rare sequences: highly specific sequence and methylation based enrichment.

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Review 8.  The great screen anomaly--a new frontier in product discovery through functional metagenomics.

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9.  Selective multiplexed enrichment for the detection and quantitation of low-fraction DNA variants via low-depth sequencing.

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10.  Metagenomic small molecule discovery methods.

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