Literature DB >> 18786627

Strategies for accessing soil metagenome for desired applications.

J Rajendhran1, P Gunasekaran.   

Abstract

Most of the microorganisms in nature are inaccessible as they are uncultivable in the laboratory. Metagenomic approaches promise the accessibility of the genetic resources and their potential applications. Genetic resources from terrestrial environments can be accessed by exploring the soil metagenome. Soil metagenomic analyses are usually initiated by the isolation of environmental DNAs. Several methods have been described for the direct isolation of environmental DNAs from soil and sediments. Application of metagenomics largely depends on the construction of genomic DNA libraries and subsequent high-throughput sequencing or library screening. Thus, obtaining large quantities of pure cloneable DNA from the environment is a prerequisite. This review discusses the recent developments related to efficient extraction and purification of soil metagenome highlighting the considerations for various metagenomic applications.

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Year:  2008        PMID: 18786627     DOI: 10.1016/j.biotechadv.2008.08.002

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  23 in total

1.  Nonlinear electrophoretic response yields a unique parameter for separation of biomolecules.

Authors:  Joel Pel; David Broemeling; Laura Mai; Hau-Ling Poon; Giorgia Tropini; René L Warren; Robert A Holt; Andre Marziali
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-17       Impact factor: 11.205

2.  An improved method suitable for isolation of high-quality metagenomic DNA from diverse soils.

Authors:  Sumit Kumar Verma; Himanshi Singh; Prakash C Sharma
Journal:  3 Biotech       Date:  2017-06-29       Impact factor: 2.406

3.  Principal methods for isolation and identification of soil microbial communities.

Authors:  Christos Stefanis; Athanasios Alexopoulos; Chrissa Voidarou; Stavros Vavias; Eugenia Bezirtzoglou
Journal:  Folia Microbiol (Praha)       Date:  2012-07-12       Impact factor: 2.099

Review 4.  Insect gut microbiome - An unexploited reserve for biotechnological application.

Authors:  Muthukalingan Krishnan; Chinnapandi Bharathiraja; Jeyaraj Pandiarajan; Vimalanathan Arun Prasanna; Jeyaprakash Rajendhran; Paramasamy Gunasekaran
Journal:  Asian Pac J Trop Biomed       Date:  2014-05

5.  Characterization of three new carboxylic ester hydrolases isolated by functional screening of a forest soil metagenomic library.

Authors:  Sophie Biver; Micheline Vandenbol
Journal:  J Ind Microbiol Biotechnol       Date:  2012-11-18       Impact factor: 3.346

6.  Expression and characterization of a novel heterologous moderately thermostable lipase derived from metagenomics in Streptomyces lividans.

Authors:  Amélie Côté; François Shareck
Journal:  J Ind Microbiol Biotechnol       Date:  2010-05-21       Impact factor: 3.346

7.  Construction and preliminary analysis of a deep-sea sediment metagenomic fosmid library from Qiongdongnan Basin, South China Sea.

Authors:  Yongfei Hu; Chengzhang Fu; Yeshi Yin; Gong Cheng; Fang Lei; Xi Yang; Jing Li; Elizabeth Jane Ashforth; Lixin Zhang; Baoli Zhu
Journal:  Mar Biotechnol (NY)       Date:  2010-06-01       Impact factor: 3.619

8.  Mining the metagenome of activated biomass of an industrial wastewater treatment plant by a novel method.

Authors:  Nandita Sharma; Himgouri Tanksale; Atya Kapley; Hemant J Purohit
Journal:  Indian J Microbiol       Date:  2012-03-25       Impact factor: 2.461

9.  Structure, fluctuation and magnitude of a natural grassland soil metagenome.

Authors:  Tom O Delmont; Emmanuel Prestat; Kevin P Keegan; Michael Faubladier; Patrick Robe; Ian M Clark; Eric Pelletier; Penny R Hirsch; Folker Meyer; Jack A Gilbert; Denis Le Paslier; Pascal Simonet; Timothy M Vogel
Journal:  ISME J       Date:  2012-02-02       Impact factor: 10.302

10.  Accessing the soil metagenome for studies of microbial diversity.

Authors:  Tom O Delmont; Patrick Robe; Sébastien Cecillon; Ian M Clark; Florentin Constancias; Pascal Simonet; Penny R Hirsch; Timothy M Vogel
Journal:  Appl Environ Microbiol       Date:  2010-12-23       Impact factor: 4.792

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