Literature DB >> 19705820

A Rubisco mutant that confers growth under a normally "inhibitory" oxygen concentration.

Sriram Satagopan1, Stephanie S Scott, Todd G Smith, F Robert Tabita.   

Abstract

Ribulose-1,5-bisphosphate (RuBP) carboxylase/oxygenase (Rubisco) is a globally significant biocatalyst that facilitates the removal and sequestration of CO2 from the biosphere. Rubisco-catalyzed CO2 reduction thus provides virtually all of the organic carbon utilized by living organisms. Despite catalyzing the rate-limiting step of photosynthetic and chemoautotrophic CO2 assimilation, Rubisco is markedly inefficient as the competition between O2 and CO2 for the same substrate limits the ability of aerobic organisms to obtain maximum amounts of organic carbon for CO2-dependent growth. Random and site-directed mutagenesis procedures were coupled with genetic selection to identify an "oxygen-insensitive" mutant cyanobacterial (Synechococcus sp. strain PCC 6301) Rubisco that allowed for CO2-dependent growth of a host bacterium at an oxygen concentration that inhibited growth of the host containing wild-type Synechococcus Rubisco. The mutant substitution, A375V, was identified as an intragenic suppressor of D103V, a negative mutant enzyme incapable of supporting autotrophic growth. Ala-375 (Ala-378 of spinach Rubisco) is a conserved residue in all form I (plant-like) Rubiscos. Structure-function analyses indicate that the A375V substitution decreased the enzyme's oxygen sensitivity (and not CO2/O2 specificity), possibly by rearranging a network of interactions in a fairly conserved hydrophobic pocket near the active site. These studies point to the potential of engineering plants and other significant aerobic organisms to fix CO2 unfettered by the presence of O2.

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Year:  2009        PMID: 19705820      PMCID: PMC2753866          DOI: 10.1021/bi9006385

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

1.  Structure determination and refinement of ribulose 1,5-bisphosphate carboxylase/oxygenase from Synechococcus PCC6301.

Authors:  J Newman; C I Branden; T A Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1993-11-01

2.  Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized.

Authors:  Guillaume G B Tcherkez; Graham D Farquhar; T John Andrews
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-26       Impact factor: 11.205

3.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

4.  Phylogenetic engineering at an interface between large and small subunits imparts land-plant kinetic properties to algal Rubisco.

Authors:  Robert J Spreitzer; Srinivasa R Peddi; Sriram Satagopan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-10       Impact factor: 11.205

5.  Serine-376 contributes to the binding of substrate by ribulose-bisphosphate carboxylase/oxygenase from Anacystis nidulans.

Authors:  G J Lee; B A McFadden
Journal:  Biochemistry       Date:  1992-03-03       Impact factor: 3.162

Review 6.  Rubisco: structure, regulatory interactions, and possibilities for a better enzyme.

Authors:  Robert J Spreitzer; Michael E Salvucci
Journal:  Annu Rev Plant Biol       Date:  2002       Impact factor: 26.379

7.  Crystal structure of activated ribulose-1,5-bisphosphate carboxylase complexed with its substrate, ribulose-1,5-bisphosphate.

Authors:  T Lundqvist; G Schneider
Journal:  J Biol Chem       Date:  1991-07-05       Impact factor: 5.157

8.  Assessment of structural and functional divergence far from the large subunit active site of ribulose-1,5-bisphosphate carboxylase/oxygenase.

Authors:  Yu-Chun Du; Srinivasa R Peddi; Robert J Spreitzer
Journal:  J Biol Chem       Date:  2003-09-23       Impact factor: 5.157

9.  Expression and assembly of active cyanobacterial ribulose-1,5-bisphosphate carboxylase/oxygenase in Escherichia coli containing stoichiometric amounts of large and small subunits.

Authors:  F R Tabita; C L Small
Journal:  Proc Natl Acad Sci U S A       Date:  1985-09       Impact factor: 11.205

10.  The X-ray structure of Synechococcus ribulose-bisphosphate carboxylase/oxygenase-activated quaternary complex at 2.2-A resolution.

Authors:  J Newman; S Gutteridge
Journal:  J Biol Chem       Date:  1993-12-05       Impact factor: 5.157

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  13 in total

1.  In Vivo Studies in Rhodospirillum rubrum Indicate That Ribulose-1,5-bisphosphate Carboxylase/Oxygenase (Rubisco) Catalyzes Two Obligatorily Required and Physiologically Significant Reactions for Distinct Carbon and Sulfur Metabolic Pathways.

Authors:  Swati Dey; Justin A North; Jaya Sriram; Bradley S Evans; F Robert Tabita
Journal:  J Biol Chem       Date:  2015-10-28       Impact factor: 5.157

2.  Structure and identification of a pterin dehydratase-like protein as a ribulose-bisphosphate carboxylase/oxygenase (RuBisCO) assembly factor in the α-carboxysome.

Authors:  Nicole M Wheatley; Christopher D Sundberg; Soheil D Gidaniyan; Duilio Cascio; Todd O Yeates
Journal:  J Biol Chem       Date:  2014-01-23       Impact factor: 5.157

3.  Functional prokaryotic RubisCO from an oceanic metagenomic library.

Authors:  Brian Witte; David John; Boris Wawrik; John H Paul; David Dayan; F Robert Tabita
Journal:  Appl Environ Microbiol       Date:  2010-03-12       Impact factor: 4.792

4.  RubisCO selection using the vigorously aerobic and metabolically versatile bacterium Ralstonia eutropha.

Authors:  Sriram Satagopan; F Robert Tabita
Journal:  FEBS J       Date:  2016-06-27       Impact factor: 5.542

5.  Structure-function studies with the unique hexameric form II ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Rhodopseudomonas palustris.

Authors:  Sriram Satagopan; Sum Chan; L Jeanne Perry; F Robert Tabita
Journal:  J Biol Chem       Date:  2014-06-18       Impact factor: 5.157

6.  Directed Evolution of an Improved Rubisco; In Vitro Analyses to Decipher Fact from Fiction.

Authors:  Yu Zhou; Spencer Whitney
Journal:  Int J Mol Sci       Date:  2019-10-10       Impact factor: 5.923

7.  Metabolic Regulation as a Consequence of Anaerobic 5-Methylthioadenosine Recycling in Rhodospirillum rubrum.

Authors:  Justin A North; Jaya Sriram; Karuna Chourey; Christopher D Ecker; Ritin Sharma; John A Wildenthal; Robert L Hettich; F Robert Tabita
Journal:  MBio       Date:  2016-07-12       Impact factor: 7.867

8.  Serine 363 of a Hydrophobic Region of Archaeal Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase from Archaeoglobus fulgidus and Thermococcus kodakaraensis Affects CO2/O2 Substrate Specificity and Oxygen Sensitivity.

Authors:  Nathan E Kreel; F Robert Tabita
Journal:  PLoS One       Date:  2015-09-18       Impact factor: 3.240

9.  Development of an activity-directed selection system enabled significant improvement of the carboxylation efficiency of Rubisco.

Authors:  Zhen Cai; Guoxia Liu; Junli Zhang; Yin Li
Journal:  Protein Cell       Date:  2014-05-30       Impact factor: 14.870

10.  RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria.

Authors:  Kelly C Wrighton; Cindy J Castelle; Vanessa A Varaljay; Sriram Satagopan; Christopher T Brown; Michael J Wilkins; Brian C Thomas; Itai Sharon; Kenneth H Williams; F Robert Tabita; Jillian F Banfield
Journal:  ISME J       Date:  2016-05-03       Impact factor: 10.302

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