Literature DB >> 15299492

Structure determination and refinement of ribulose 1,5-bisphosphate carboxylase/oxygenase from Synechococcus PCC6301.

J Newman1, C I Branden, T A Jones.   

Abstract

The structure of an activated quaternary complex of ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco) from Synechococcus PCC6301 has been solved by molecular replacement. The protein crystallizes in an orthorhombic P2(1)2(1)2(1) unit cell with a complete L(8)S(8) complex consisting of 4608 residues (37 680 non-hydrogen atoms) in the asymmetric unit. Data were collected both on film and image plate using synchrotron radiation; there were 218 276 unique reflections in the final 2.2 A data set. The eightfold non-crystallographic symmetry could be used both to improve map quality and to reduce the computing requirements of refinement. The coordinates were refined using strict non-crystallographic symmetry constraints. The stereochemistry of the final model is good, and the model has an R value of 20.0% for the reflections between 7 and 2.2 A.

Entities:  

Year:  1993        PMID: 15299492     DOI: 10.1107/S090744499300530X

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  16 in total

1.  Elucidating essential role of conserved carboxysomal protein CcmN reveals common feature of bacterial microcompartment assembly.

Authors:  James N Kinney; Annette Salmeen; Fei Cai; Cheryl A Kerfeld
Journal:  J Biol Chem       Date:  2012-03-29       Impact factor: 5.157

2.  Structure and mechanism of the Rubisco-assembly chaperone Raf1.

Authors:  Thomas Hauser; Javaid Y Bhat; Goran Miličić; Petra Wendler; F Ulrich Hartl; Andreas Bracher; Manajit Hayer-Hartl
Journal:  Nat Struct Mol Biol       Date:  2015-08-03       Impact factor: 15.369

Review 3.  Functions, compositions, and evolution of the two types of carboxysomes: polyhedral microcompartments that facilitate CO2 fixation in cyanobacteria and some proteobacteria.

Authors:  Benjamin D Rae; Benedict M Long; Murray R Badger; G Dean Price
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

4.  Coupled chaperone action in folding and assembly of hexadecameric Rubisco.

Authors:  Cuimin Liu; Anna L Young; Amanda Starling-Windhof; Andreas Bracher; Sandra Saschenbrecker; Bharathi Vasudeva Rao; Karnam Vasudeva Rao; Otto Berninghausen; Thorsten Mielke; F Ulrich Hartl; Roland Beckmann; Manajit Hayer-Hartl
Journal:  Nature       Date:  2010-01-14       Impact factor: 49.962

Review 5.  Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms.

Authors:  F Robert Tabita; Thomas E Hanson; Sriram Satagopan; Brian H Witte; Nathan E Kreel
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-08-27       Impact factor: 6.237

6.  Crystal structure of a chaperone-bound assembly intermediate of form I Rubisco.

Authors:  Andreas Bracher; Amanda Starling-Windhof; F Ulrich Hartl; Manajit Hayer-Hartl
Journal:  Nat Struct Mol Biol       Date:  2011-07-17       Impact factor: 15.369

7.  Role of small subunit in mediating assembly of red-type form I Rubisco.

Authors:  Jidnyasa Joshi; Oliver Mueller-Cajar; Yi-Chin C Tsai; F Ulrich Hartl; Manajit Hayer-Hartl
Journal:  J Biol Chem       Date:  2014-11-04       Impact factor: 5.157

8.  Opposing effects of folding and assembly chaperones on evolvability of Rubisco.

Authors:  Paulo Durão; Harald Aigner; Péter Nagy; Oliver Mueller-Cajar; F Ulrich Hartl; Manajit Hayer-Hartl
Journal:  Nat Chem Biol       Date:  2015-01-05       Impact factor: 15.040

9.  Novel bacterial clade reveals origin of form I Rubisco.

Authors:  Jose H Pereira; Albert K Liu; Douglas M Banda; Douglas J Orr; Michal Hammel; Christine He; Martin A J Parry; Elizabete Carmo-Silva; Paul D Adams; Jillian F Banfield; Patrick M Shih
Journal:  Nat Plants       Date:  2020-08-31       Impact factor: 15.793

10.  A Rubisco mutant that confers growth under a normally "inhibitory" oxygen concentration.

Authors:  Sriram Satagopan; Stephanie S Scott; Todd G Smith; F Robert Tabita
Journal:  Biochemistry       Date:  2009-09-29       Impact factor: 3.162

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