Literature DB >> 26511314

In Vivo Studies in Rhodospirillum rubrum Indicate That Ribulose-1,5-bisphosphate Carboxylase/Oxygenase (Rubisco) Catalyzes Two Obligatorily Required and Physiologically Significant Reactions for Distinct Carbon and Sulfur Metabolic Pathways.

Swati Dey1, Justin A North1, Jaya Sriram1, Bradley S Evans2, F Robert Tabita3.   

Abstract

All organisms possess fundamental metabolic pathways to ensure that needed carbon and sulfur compounds are provided to the cell in the proper chemical form and oxidation state. For most organisms capable of using CO2 as sole source of carbon, ribulose-1,5-bisphosphate (RuBP) carboxylase/oxygenase (Rubisco) catalyzes primary carbon dioxide assimilation. In addition, sulfur salvage pathways are necessary to ensure that key sulfur-containing compounds are both available and, where necessary, detoxified in the cell. Using knock-out mutations and metabolomics in the bacterium Rhodospirillum rubrum, we show here that Rubisco concurrently catalyzes key and essential reactions for seemingly unrelated but physiologically essential central carbon and sulfur salvage metabolic pathways of the cell. In this study, complementation and mutagenesis studies indicated that representatives of all known extant functional Rubisco forms found in nature are capable of simultaneously catalyzing reactions required for both CO2-dependent growth as well as growth using 5-methylthioadenosine as sole sulfur source under anaerobic photosynthetic conditions. Moreover, specific inactivation of the CO2 fixation reaction did not affect the ability of Rubisco to support anaerobic 5-methylthioadenosine metabolism, suggesting that the active site of Rubisco has evolved to ensure that this enzyme maintains both key functions. Thus, despite the coevolution of both functions, the active site of this protein may be differentially modified to affect only one of its key functions.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  5-methylthioadenosine; carbon fixation; enzyme; metabolism; metabololomics; metabolomics; methylthioadenosine; ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO); sulfur; sulfur salvage

Mesh:

Substances:

Year:  2015        PMID: 26511314      PMCID: PMC4692197          DOI: 10.1074/jbc.M115.691295

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  34 in total

1.  Mechanism of Rubisco: The Carbamate as General Base.

Authors:  W. Wallace Cleland; T. John Andrews; Steven Gutteridge; Fred C. Hartman; George H. Lorimer
Journal:  Chem Rev       Date:  1998-04-02       Impact factor: 60.622

2.  OBSERVATIONS ON THE METABOLISM OF 5'-METHYLTHIOADENOSINE.

Authors:  F SCHLENK; D J EHNINGER
Journal:  Arch Biochem Biophys       Date:  1964-07-20       Impact factor: 4.013

3.  Light-dependent utilization of organic compounds and photoproduction of molecular hydrogen by photosynthetic bacteria; relationships with nitrogen metabolism.

Authors:  J G ORMEROD; K S ORMEROD; H GEST
Journal:  Arch Biochem Biophys       Date:  1961-09       Impact factor: 4.013

4.  Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidum.

Authors:  Huiying Li; Michael R Sawaya; F Robert Tabita; David Eisenberg
Journal:  Structure       Date:  2005-05       Impact factor: 5.006

5.  A ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO)-like protein from Chlorobium tepidum that is involved with sulfur metabolism and the response to oxidative stress.

Authors:  T E Hanson; F R Tabita
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-03       Impact factor: 11.205

6.  A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.

Authors:  Hiroki Ashida; Yohtaro Saito; Chojiro Kojima; Kazuo Kobayashi; Naotake Ogasawara; Akiho Yokota
Journal:  Science       Date:  2003-10-10       Impact factor: 47.728

Review 7.  Rubisco: structure, regulatory interactions, and possibilities for a better enzyme.

Authors:  Robert J Spreitzer; Michael E Salvucci
Journal:  Annu Rev Plant Biol       Date:  2002       Impact factor: 26.379

8.  Positive and negative selection of mutant forms of prokaryotic (cyanobacterial) ribulose-1,5-bisphosphate carboxylase/oxygenase.

Authors:  Stephanie A Smith; F Robert Tabita
Journal:  J Mol Biol       Date:  2003-08-15       Impact factor: 5.469

9.  Oxygen-dependent H2O2 production by Rubisco.

Authors:  Kangmin Kim; Archie R Portis
Journal:  FEBS Lett       Date:  2004-07-30       Impact factor: 4.124

10.  Glycine 176 affects catalytic properties and stability of the Synechococcus sp. strain PCC6301 ribulose-1,5-bisphosphate carboxylase/oxygenase.

Authors:  Stephanie A Smith; F Robert Tabita
Journal:  J Biol Chem       Date:  2004-04-02       Impact factor: 5.157

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  10 in total

1.  A bifunctional salvage pathway for two distinct S-adenosylmethionine by-products that is widespread in bacteria, including pathogenic Escherichia coli.

Authors:  Justin A North; John A Wildenthal; Tobias J Erb; Bradley S Evans; Kathryn M Byerly; John A Gerlt; Fred R Tabita
Journal:  Mol Microbiol       Date:  2020-02-20       Impact factor: 3.501

2.  The Arnon-Buchanan cycle: a retrospective, 1966-2016.

Authors:  Bob B Buchanan; Reidun Sirevåg; Georg Fuchs; Ruslan N Ivanovsky; Yasuo Igarashi; Masaharu Ishii; F Robert Tabita; Ivan A Berg
Journal:  Photosynth Res       Date:  2017-10-10       Impact factor: 3.573

3.  Metabolic Regulation as a Consequence of Anaerobic 5-Methylthioadenosine Recycling in Rhodospirillum rubrum.

Authors:  Justin A North; Jaya Sriram; Karuna Chourey; Christopher D Ecker; Ritin Sharma; John A Wildenthal; Robert L Hettich; F Robert Tabita
Journal:  MBio       Date:  2016-07-12       Impact factor: 7.867

4.  RuBisCO in Non-Photosynthetic Alga Euglena longa: Divergent Features, Transcriptomic Analysis and Regulation of Complex Formation.

Authors:  Kristína Záhonová; Zoltán Füssy; Miroslav Oborník; Marek Eliáš; Vyacheslav Yurchenko
Journal:  PLoS One       Date:  2016-07-08       Impact factor: 3.240

5.  Microbial pathway for anaerobic 5'-methylthioadenosine metabolism coupled to ethylene formation.

Authors:  Justin A North; Anthony R Miller; John A Wildenthal; Sarah J Young; F Robert Tabita
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-13       Impact factor: 11.205

6.  Selection of Cyanobacterial (Synechococcus sp. Strain PCC 6301) RubisCO Variants with Improved Functional Properties That Confer Enhanced CO2-Dependent Growth of Rhodobacter capsulatus, a Photosynthetic Bacterium.

Authors:  Sriram Satagopan; Katherine A Huening; F Robert Tabita
Journal:  mBio       Date:  2019-07-23       Impact factor: 7.867

Review 7.  Upper ocean oxygenation, evolution of RuBisCO and the Phanerozoic succession of phytoplankton.

Authors:  Rosalind E M Rickaby; M R Eason Hubbard
Journal:  Free Radic Biol Med       Date:  2019-05-07       Impact factor: 7.376

8.  Wide range of metabolic adaptations to the acquisition of the Calvin cycle revealed by comparison of microbial genomes.

Authors:  Johannes Asplund-Samuelsson; Elton P Hudson
Journal:  PLoS Comput Biol       Date:  2021-02-08       Impact factor: 4.475

9.  Two Distinct Aerobic Methionine Salvage Pathways Generate Volatile Methanethiol in Rhodopseudomonas palustris.

Authors:  Anthony R Miller; Justin A North; John A Wildenthal; F Robert Tabita
Journal:  mBio       Date:  2018-04-10       Impact factor: 7.867

10.  Revisiting the methionine salvage pathway and its paralogues.

Authors:  Agnieszka Sekowska; Hiroki Ashida; Antoine Danchin
Journal:  Microb Biotechnol       Date:  2018-10-10       Impact factor: 5.813

  10 in total

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