Literature DB >> 19702261

A double TROSY hNCAnH experiment for efficient assignment of large and challenging proteins.

Dominique P Frueh1, Haribabu Arthanari, Alexander Koglin, Christopher T Walsh, Gerhard Wagner.   

Abstract

We present an experiment that allows for a straightforward assignment of NMR resonances, even in large and/or challenging proteins. A single 3D double-TROSY experiment provides three pairs of sequential correlations between two alpha carbons, two amide protons, and two nitrogen nuclei. Thus, all correlated nuclei can readily be visualized within all dimensions of the resulting spectrum, and chain elongation of sequential amino acids can be effected with this single data set. This resolves ambiguities occurring in traditional methods which involve time-consuming and cumbersome strip comparisons obtained with series of triple-resonance spectra. The experiment makes use of the double TROSY technique to account for signal intensity losses during transfer and evolution periods and was tested on a 500 microM sample of the 33 kDa nonribosomal peptide synthetase protein EntB.

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Year:  2009        PMID: 19702261      PMCID: PMC2749991          DOI: 10.1021/ja9046685

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

Review 1.  NMR spectroscopy: a multifaceted approach to macromolecular structure.

Authors:  A E Ferentz; G Wagner
Journal:  Q Rev Biophys       Date:  2000-02       Impact factor: 5.318

2.  Structure of the EntB multidomain nonribosomal peptide synthetase and functional analysis of its interaction with the EntE adenylation domain.

Authors:  Eric J Drake; David A Nicolai; Andrew M Gulick
Journal:  Chem Biol       Date:  2006-04

3.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

4.  Unambiguous assignment of NMR protein backbone signals with a time-shared triple-resonance experiment.

Authors:  Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

5.  Use of selective C alpha pulses for improvement of HN(CA)CO-D and HN(COCA)NH-D experiments.

Authors:  H Matsuo; E Kupce; H Li; G Wagner
Journal:  J Magn Reson B       Date:  1996-05

6.  Improved 3D triple resonance experiments, HNN and HN(C)N, for HN and 15N sequential correlations in (13C, 15N) labeled proteins: application to unfolded proteins.

Authors:  S C Panchal; N S Bhavesh; R V Hosur
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

7.  (H)N(COCA)NH and HN(COCA)NH experiments for 1H-15N backbone assignments in 13C/15N-labeled proteins.

Authors:  C Bracken; A G Palmer; J Cavanagh
Journal:  J Biomol NMR       Date:  1997-01       Impact factor: 2.835

8.  Fast assignment of 15N-HSQC peaks using high-resolution 3D HNcocaNH experiments with non-uniform sampling.

Authors:  Zhen-Yu J Sun; Dominique P Frueh; Philipp Selenko; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-09       Impact factor: 2.835

9.  Structural basis for the selectivity of the external thioesterase of the surfactin synthetase.

Authors:  Alexander Koglin; Frank Löhr; Frank Bernhard; Vladimir V Rogov; Dominique P Frueh; Eric R Strieter; Mohammad R Mofid; Peter Güntert; Gerhard Wagner; Christopher T Walsh; Mohamed A Marahiel; Volker Dötsch
Journal:  Nature       Date:  2008-08-14       Impact factor: 49.962

10.  3D triple-resonance NMR techniques for the sequential assignment of NH and 15N resonances in 15N- and 13C-labelled proteins.

Authors:  R Weisemann; H Rüterjans; W Bermel
Journal:  J Biomol NMR       Date:  1993-01       Impact factor: 2.835

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  9 in total

1.  SAGA: rapid automatic mainchain NMR assignment for large proteins.

Authors:  Gordon M Crippen; Aikaterini Rousaki; Matthew Revington; Yongbo Zhang; Erik R P Zuiderweg
Journal:  J Biomol NMR       Date:  2010-03-16       Impact factor: 2.835

2.  EZ-ASSIGN, a program for exhaustive NMR chemical shift assignments of large proteins from complete or incomplete triple-resonance data.

Authors:  Erik R P Zuiderweg; Ireena Bagai; Paolo Rossi; Eric B Bertelsen
Journal:  J Biomol NMR       Date:  2013-10       Impact factor: 2.835

3.  A reduced dimensionality NMR pulse sequence and an efficient protocol for unambiguous assignment in intrinsically disordered proteins.

Authors:  Jithender G Reddy; Ramakrishna V Hosur
Journal:  J Biomol NMR       Date:  2014-05-23       Impact factor: 2.835

4.  RDC derived protein backbone resonance assignment using fragment assembly.

Authors:  Xingsheng Wang; Brian Tash; John M Flanagan; Fang Tian
Journal:  J Biomol NMR       Date:  2010-12-30       Impact factor: 2.835

Review 5.  NMR methods for structural studies of large monomeric and multimeric proteins.

Authors:  Dominique P Frueh; Andrew C Goodrich; Subrata H Mishra; Scott R Nichols
Journal:  Curr Opin Struct Biol       Date:  2013-07-11       Impact factor: 6.809

Review 6.  Applications of non-uniform sampling and processing.

Authors:  Sven G Hyberts; Haribabu Arthanari; Gerhard Wagner
Journal:  Top Curr Chem       Date:  2012

7.  Efficient sequential assignments in proteins with reduced dimensionality 3D HN(CA)NH.

Authors:  Kousik Chandra; Garima Jaipuria; Divya Shet; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2012-01-07       Impact factor: 2.835

8.  Mixed pyruvate labeling enables backbone resonance assignment of large proteins using a single experiment.

Authors:  Scott A Robson; Koh Takeuchi; Andras Boeszoermenyi; Paul W Coote; Abhinav Dubey; Sven Hyberts; Gerhard Wagner; Haribabu Arthanari
Journal:  Nat Commun       Date:  2018-01-24       Impact factor: 14.919

9.  Global protein dynamics as communication sensors in peptide synthetase domains.

Authors:  Subrata H Mishra; Aswani K Kancherla; Kenneth A Marincin; Guillaume Bouvignies; Santrupti Nerli; Nikolaos Sgourakis; Daniel P Dowling; Dominique P Frueh
Journal:  Sci Adv       Date:  2022-07-15       Impact factor: 14.957

  9 in total

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