Literature DB >> 11495245

Improved 3D triple resonance experiments, HNN and HN(C)N, for HN and 15N sequential correlations in (13C, 15N) labeled proteins: application to unfolded proteins.

S C Panchal1, N S Bhavesh, R V Hosur.   

Abstract

Two triple resonance experiments, HNN and HN(C)N, are presented which correlate HN and 15N resonances sequentially along the polypeptide chain of a doubly (13C, 15N) labeled protein. These incorporate several improvements over the previously published sequences for a similar purpose and have several novel features. The spectral characteristics enable direct identification of certain triplets of residues, which provide many starting points for the sequential assignment procedure. The experiments are sensitive and their utility has been demonstrated with a 22 kDa protein under unfolding conditions where most of the standard triple resonance experiments such as HNCA, CBCANH etc. have limited success because of poor amide, Calpha and Cbeta chemical shift dispersions.

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Year:  2001        PMID: 11495245     DOI: 10.1023/a:1011239023422

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  18 in total

1.  Efficient side-chain and backbone assignment in large proteins: application to tGCN5.

Authors:  Y Lin; G Wagner
Journal:  J Biomol NMR       Date:  1999-11       Impact factor: 2.835

2.  Structural and dynamical properties of a denatured protein. Heteronuclear 3D NMR experiments and theoretical simulations of lysozyme in 8 M urea.

Authors:  H Schwalbe; K M Fiebig; M Buck; J A Jones; S B Grimshaw; A Spencer; S J Glaser; L J Smith; C M Dobson
Journal:  Biochemistry       Date:  1997-07-22       Impact factor: 3.162

3.  Gradient and sensitivity enhanced multiple-quantum coherence in heteronuclear multidimensional NMR experiments.

Authors:  X M Kong; K H Sze; G Zhu
Journal:  J Biomol NMR       Date:  1999-06       Impact factor: 2.835

4.  Use of selective C alpha pulses for improvement of HN(CA)CO-D and HN(COCA)NH-D experiments.

Authors:  H Matsuo; E Kupce; H Li; G Wagner
Journal:  J Magn Reson B       Date:  1996-05

5.  An efficient HN(CA)NH pluse scheme for triple-resonance 4D correlation of sequential amide protons and nitrogens-15 in deuterated proteins.

Authors:  T Ikegami; S Sato; M Wälchli; Y Kyogoku; M Shirakawa
Journal:  J Magn Reson       Date:  1997-01       Impact factor: 2.229

6.  Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis.

Authors:  D R Booth; M Sunde; V Bellotti; C V Robinson; W L Hutchinson; P E Fraser; P N Hawkins; C M Dobson; S E Radford; C C Blake; M B Pepys
Journal:  Nature       Date:  1997-02-27       Impact factor: 49.962

Review 7.  Defective protein folding as a basis of human disease.

Authors:  P J Thomas; B H Qu; P L Pedersen
Journal:  Trends Biochem Sci       Date:  1995-11       Impact factor: 13.807

8.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

9.  NMR experiments for resonance assignments of 13C, 15N doubly-labeled flexible polypeptides: application to the human prion protein hPrP(23-230).

Authors:  A Liu; R Riek; G Wider; C von Schroetter; R Zahn; K Wüthrich
Journal:  J Biomol NMR       Date:  2000-02       Impact factor: 2.835

10.  3D triple-resonance NMR techniques for the sequential assignment of NH and 15N resonances in 15N- and 13C-labelled proteins.

Authors:  R Weisemann; H Rüterjans; W Bermel
Journal:  J Biomol NMR       Date:  1993-01       Impact factor: 2.835

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  76 in total

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Journal:  Biophys Chem       Date:  2020-05-19       Impact factor: 2.352

2.  Structural dynamics and multiregion interactions in dynein-dynactin recognition.

Authors:  Jessica L Morgan; Yujuan Song; Elisar Barbar
Journal:  J Biol Chem       Date:  2011-09-19       Impact factor: 5.157

3.  Non-uniformly sampled double-TROSY hNcaNH experiments for NMR sequential assignments of large proteins.

Authors:  Dominique P Frueh; Zhen-Yu J Sun; David A Vosburg; Christopher T Walsh; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

4.  Characterisation of a mobile protein-binding epitope in the translocation domain of colicin E9.

Authors:  Colin J Macdonald; Kaeko Tozawa; Emily S Collins; Christopher N Penfold; Richard James; Colin Kleanthous; Nigel J Clayden; Geoffrey R Moore
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

5.  HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.

Authors:  Christoph Wiedemann; Nishit Goradia; Sabine Häfner; Christian Herbst; Matthias Görlach; Oliver Ohlenschläger; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

6.  Molecular Basis for Phosphorylation-dependent SUMO Recognition by the DNA Repair Protein RAP80.

Authors:  Leo Spyracopoulos
Journal:  J Biol Chem       Date:  2015-12-30       Impact factor: 5.157

7.  pH driven conformational dynamics and dimer-to-monomer transition in DLC8.

Authors:  P M Krishna Mohan; Maneesha Barve; Amarnath Chatterjee; Ramakrishna V Hosur
Journal:  Protein Sci       Date:  2005-12-29       Impact factor: 6.725

8.  NMR resonance assignments of the human high mobility group protein HMGA1.

Authors:  Garry W Buchko; Shuisong Ni; Natacha M Lourette; Raymond Reeves; Michael A Kennedy
Journal:  J Biomol NMR       Date:  2007-01-06       Impact factor: 2.835

9.  Intraresidual HNCA: an experiment for correlating only intraresidual backbone resonances.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2002-07       Impact factor: 2.835

10.  A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMR.

Authors:  Xingsheng Wang; Shaojie Zhang; Jiahai Zhang; Xiaojuan Huang; Chao Xu; Weiwei Wang; Zhijun Liu; Jihui Wu; Yunyu Shi
Journal:  J Biol Chem       Date:  2009-12-09       Impact factor: 5.157

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