Literature DB >> 19693342

Rapid on-chip genetic detection microfluidic platform for real world applications.

Satyajyoti Senapati, Andrew R Mahon, Jason Gordon, Carsten Nowak, Shramik Sengupta, Thomas H Q Powell, Jeffrey Feder, David M Lodge, Hsueh-Chia Chang.   

Abstract

The development of genetic detection protocols for field applications is an important aspect of modern medical diagnostic technology and environmental monitoring. In this paper, we report a rapid, portable, and inexpensive DNA hybridization technique using a bead-based microfluidic platform that functions by passing fluorescently labeled target DNA through a chamber packed with functionalized beads within a microfluidic channel. DNA hybridization is then assessed using a digital camera attached to a Clare Chemical DR-45M dark reader non-UV transilluminator that uses visible light as an excitation source and a blue and amber filter to reveal fluorescence. This microfluidic approach significantly enhances hybridization by reducing the diffusion time between target DNA and the silica surface. The use of probe-functionalized beads as solid support also enhances the sensitivity and limit of detection due to a larger surface area per unit volume. This platform could be adapted for use in medical applications and environmental monitoring, including the detection of harmful organisms in the ballast water of ships.

Entities:  

Year:  2009        PMID: 19693342      PMCID: PMC2717575          DOI: 10.1063/1.3127142

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  15 in total

1.  Dynamic DNA hybridization on a chip using paramagnetic beads.

Authors:  Z H Fan; S Mangru; R Granzow; P Heaney; W Ho; Q Dong; R Kumar
Journal:  Anal Chem       Date:  1999-11-01       Impact factor: 6.986

2.  Hybridization enhancement using cavitation microstreaming.

Authors:  Robin Hui Liu; Ralf Lenigk; Roberta L Druyor-Sanchez; Jianing Yang; Piotr Grodzinski
Journal:  Anal Chem       Date:  2003-04-15       Impact factor: 6.986

3.  DNA hybridization and discrimination of single-nucleotide mismatches using chip-based microbead arrays.

Authors:  Mehnaaz F Ali; Romy Kirby; Adrian P Goodey; Marc D Rodriguez; Andrew D Ellington; Dean P Neikirk; John T McDevitt
Journal:  Anal Chem       Date:  2003-09-15       Impact factor: 6.986

Review 4.  Micro total analysis systems. Recent developments.

Authors:  Torsten Vilkner; Dirk Janasek; Andreas Manz
Journal:  Anal Chem       Date:  2004-06-15       Impact factor: 6.986

5.  Beads and chips: new recipes for analysis.

Authors:  Elisabeth Verpoorte
Journal:  Lab Chip       Date:  2003-10-27       Impact factor: 6.799

Review 6.  Nucleic acid-based methods for the detection of bacterial pathogens: present and future considerations for the clinical laboratory.

Authors:  Elizabeth A Mothershed; Anne M Whitney
Journal:  Clin Chim Acta       Date:  2005-09-01       Impact factor: 3.786

Review 7.  Advances in nucleic acid-based diagnostics of bacterial infections.

Authors:  Kim B Barken; Janus A J Haagensen; Tim Tolker-Nielsen
Journal:  Clin Chim Acta       Date:  2007-07-13       Impact factor: 3.786

8.  Rapid discrimination of single-nucleotide mismatches using a microfluidic device with monolayered beads.

Authors:  Johnson Kian-Kok Ng; Hanhua Feng; Wen-Tso Liu
Journal:  Anal Chim Acta       Date:  2006-09-16       Impact factor: 6.558

9.  Specific detection of Pacific oyster (Crassostrea gigas) larvae in plankton samples using nested polymerase chain reaction.

Authors:  Jawahar G Patil; Rasanthi M Gunasekera; Bruce E Deagle; Nicholas J Bax
Journal:  Mar Biotechnol (NY)       Date:  2005-03-15       Impact factor: 3.619

10.  Electrochemical microfluidic biosensor for the detection of nucleic acid sequences.

Authors:  Vasiliy N Goral; Natalya V Zaytseva; Antje J Baeumner
Journal:  Lab Chip       Date:  2006-01-24       Impact factor: 6.799

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  14 in total

1.  Dielectrophoretic separation of colorectal cancer cells.

Authors:  Fang Yang; Xiaoming Yang; Hong Jiang; Phillip Bulkhaults; Patricia Wood; William Hrushesky; Guiren Wang
Journal:  Biomicrofluidics       Date:  2010-01-12       Impact factor: 2.800

2.  Designing a sensitive and quantifiable nanocolloid assay with dielectrophoretic crossover frequencies.

Authors:  Sagnik Basuray; Hsueh-Chia Chang
Journal:  Biomicrofluidics       Date:  2010-01-22       Impact factor: 2.800

3.  Preface to special topic: papers from the 2009 conference on advances in microfluidics and nanofluidics, the Hong Kong university of science & technology, Hong Kong, 2009.

Authors:  Leslie Y Yeo
Journal:  Biomicrofluidics       Date:  2009-06-26       Impact factor: 2.800

4.  An automated microfluidic system for single-stranded DNA preparation and magnetic bead-based microarray analysis.

Authors:  Shuaiqin Wang; Yujia Sun; Wupeng Gan; Yan Liu; Guangxin Xiang; Dong Wang; Lei Wang; Jing Cheng; Peng Liu
Journal:  Biomicrofluidics       Date:  2015-03-04       Impact factor: 2.800

5.  Viscoelastic effects on electrokinetic particle focusing in a constricted microchannel.

Authors:  Xinyu Lu; John DuBose; Sang Woo Joo; Shizhi Qian; Xiangchun Xuan
Journal:  Biomicrofluidics       Date:  2015-01-22       Impact factor: 2.800

Review 6.  Ionic current devices-Recent progress in the merging of electronic, microfluidic, and biomimetic structures.

Authors:  Hyung-Jun Koo; Orlin D Velev
Journal:  Biomicrofluidics       Date:  2013-05-09       Impact factor: 2.800

7.  Optimization of microfluidic microsphere-trap arrays.

Authors:  Xiaoxiao Xu; Pinaki Sarder; Zhenyu Li; Arye Nehorai
Journal:  Biomicrofluidics       Date:  2013-02-27       Impact factor: 2.800

8.  Rapid detection of natriuretic peptides by a microfluidic LabChip analyzer with DNA aptamers: Application of natriuretic peptide detection.

Authors:  Ming-Cheng Lin; Jiraporn Nawarak; Tai-Yuan Chen; Hsien-Yu Tsai; Jung-Feng Hsieh; Supachok Sinchaikul; Shui-Tein Chen
Journal:  Biomicrofluidics       Date:  2009-07-30       Impact factor: 2.800

9.  Smartphone-interfaced lab-on-a-chip devices for field-deployable enzyme-linked immunosorbent assay.

Authors:  Arnold Chen; Royal Wang; Candace R S Bever; Siyuan Xing; Bruce D Hammock; Tingrui Pan
Journal:  Biomicrofluidics       Date:  2014-11-05       Impact factor: 2.800

10.  Convenient quantification of methanol concentration detection utilizing an integrated microfluidic chip.

Authors:  Yao-Nan Wang; Ruey-Jen Yang; Wei-Jhong Ju; Ming-Chang Wu; Lung-Ming Fu
Journal:  Biomicrofluidics       Date:  2012-08-13       Impact factor: 2.800

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