Literature DB >> 16139259

Nucleic acid-based methods for the detection of bacterial pathogens: present and future considerations for the clinical laboratory.

Elizabeth A Mothershed1, Anne M Whitney.   

Abstract

BACKGROUND: Recent advances in nucleic acid-based methods to detect bacteria offer increased sensitivity and specificity over traditional microbiological techniques. The potential benefit of nucleic acid-based testing to the clinical laboratory is reduced time to diagnosis, high throughput, and accurate and reliable results.
METHODS: Several PCR and hybridization tests are commercially available for specific organism detection. Furthermore, hundreds of nucleic acid-based bacterial detection tests have been published in the literature and could be adapted for use in the clinical setting. Contamination potential, lack of standardization or validation for some assays, complex interpretation of results, and increased cost are possible limitations of these tests, however, and must be carefully considered before implementing them in the clinical laboratory.
CONCLUSIONS: A major area of advancement in nucleic acid-based assay development has been for specific and broad-range detection of bacterial pathogens.

Mesh:

Substances:

Year:  2005        PMID: 16139259     DOI: 10.1016/j.cccn.2005.05.050

Source DB:  PubMed          Journal:  Clin Chim Acta        ISSN: 0009-8981            Impact factor:   3.786


  46 in total

1.  Obstacles of Multiplex Real-Time PCR for Bacterial 16S rDNA: Primer Specifity and DNA Decontamination of Taq Polymerase.

Authors:  Sebastian Philipp; Hartwig P Huemer; Eveline U Irschick; Christoph Gassner
Journal:  Transfus Med Hemother       Date:  2010-01-07       Impact factor: 3.747

2.  Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization.

Authors:  Irina Smolina; Charles Lee; Maxim Frank-Kamenetskii
Journal:  Appl Environ Microbiol       Date:  2007-02-09       Impact factor: 4.792

3.  A novel sequence-specific RNA quantification method using nicking endonuclease, dual-labeled fluorescent DNA probe, and conformation-interchangeable oligo-DNA.

Authors:  Kazufumi Hosoda; Tomoaki Matsuura; Hiroshi Kita; Norikazu Ichihashi; Koji Tsukada; Itaru Urabe; Tetsuya Yomo
Journal:  RNA       Date:  2008-01-29       Impact factor: 4.942

4.  Rapid on-chip genetic detection microfluidic platform for real world applications.

Authors:  Satyajyoti Senapati; Andrew R Mahon; Jason Gordon; Carsten Nowak; Shramik Sengupta; Thomas H Q Powell; Jeffrey Feder; David M Lodge; Hsueh-Chia Chang
Journal:  Biomicrofluidics       Date:  2009-05-04       Impact factor: 2.800

5.  A novel and highly specific phage endolysin cell wall binding domain for detection of Bacillus cereus.

Authors:  Minsuk Kong; Jieun Sim; Taejoon Kang; Hoang Hiep Nguyen; Hyun Kyu Park; Bong Hyun Chung; Sangryeol Ryu
Journal:  Eur Biophys J       Date:  2015-06-05       Impact factor: 1.733

6.  PNA-based microbial pathogen identification and resistance marker detection: An accurate, isothermal rapid assay based on genome-specific features.

Authors:  Irina Smolina; Nancy S Miller; Maxim D Frank-Kamenetskii
Journal:  Artif DNA PNA XNA       Date:  2010-10

7.  Combined negative dielectrophoresis with a flexible SERS platform as a novel strategy for rapid detection and identification of bacteria.

Authors:  Ariadna B Nowicka; Marta Czaplicka; Tomasz Szymborski; Agnieszka Kamińska
Journal:  Anal Bioanal Chem       Date:  2021-01-28       Impact factor: 4.142

8.  Label-Free Pathogen Detection by a Deoxyribozyme Cascade with Visual Signal Readout.

Authors:  Adam J Reed; Ryan P Connelly; Allison Williams; Maithi Tran; Byoung-Shik Shim; Hyeryun Choe; Yulia V Gerasimova
Journal:  Sens Actuators B Chem       Date:  2018-11-29       Impact factor: 7.460

9.  Development of a new loop-mediated isothermal amplification assay for prt (rfbS) gene to improve the identification of Salmonella serogroup D.

Authors:  Hadi Ravan; Razieh Yazdanparast
Journal:  World J Microbiol Biotechnol       Date:  2012-02-09       Impact factor: 3.312

10.  A method for automatically extracting infectious disease-related primers and probes from the literature.

Authors:  Miguel García-Remesal; Alejandro Cuevas; Victoria López-Alonso; Guillermo López-Campos; Guillermo de la Calle; Diana de la Iglesia; David Pérez-Rey; José Crespo; Fernando Martín-Sánchez; Víctor Maojo
Journal:  BMC Bioinformatics       Date:  2010-08-03       Impact factor: 3.169

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