Literature DB >> 19688872

Standard operating procedure for metabonomics studies of blood serum and plasma samples using a 1H-NMR micro-flow probe.

Dinesh K Sukumaran1, Erwin Garcia, Jia Hua, Walter Tabaczynski, Kunle Odunsi, Chris Andrews, Thomas Szyperski.   

Abstract

A standard operating procedure (SOP) is presented for high-throughput metabonomics studies using a 600 MHz NMR spectrometer equipped with a micro-flow probe that is connected to an auto-sampler. The procedure is designed to minimize random and systematic variation of NMR data collection. In addition, a protocol is described to assess the quality of the data acquired by a given NMR spectroscopist to ensure that (i) all researchers involved in the NMR data acquisition of a metabonomics research program perform equally and (ii) operator-associated variation of NMR data collection is statistically not relevant for the interpretation of results obtained from multivariate data analyses.

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Year:  2009        PMID: 19688872     DOI: 10.1002/mrc.2469

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  8 in total

1.  Influence of common preanalytical variations on the metabolic profile of serum samples in biobanks.

Authors:  Ophélie Fliniaux; Gwenaelle Gaillard; Antoine Lion; Dominique Cailleu; François Mesnard; Fotini Betsou
Journal:  J Biomol NMR       Date:  2011-10-02       Impact factor: 2.835

2.  The application of micro-coil NMR probe technology to metabolomics of urine and serum.

Authors:  John H Grimes; Thomas M O'Connell
Journal:  J Biomol NMR       Date:  2011-03-06       Impact factor: 2.835

Review 3.  Can NMR solve some significant challenges in metabolomics?

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  J Magn Reson       Date:  2015-08-18       Impact factor: 2.229

4.  Diagnosis of early stage ovarian cancer by 1H NMR metabonomics of serum explored by use of a microflow NMR probe.

Authors:  Erwin Garcia; Chris Andrews; Jia Hua; Hyung L Kim; Dinesh K Sukumaran; Thomas Szyperski; Kunle Odunsi
Journal:  J Proteome Res       Date:  2011-02-22       Impact factor: 4.466

5.  (1)H NMR based profiling of spent culture media cannot predict success of implantation for day 3 human embryos.

Authors:  Paolo Rinaudo; Shehua Shen; Jia Hua; Su Qian; Uday Prabhu; Erwin Garcia; Marcelle Cedars; Dinesh Sukumaran; Thomas Szyperski; Chris Andrews
Journal:  J Assist Reprod Genet       Date:  2012-10-23       Impact factor: 3.412

Review 6.  Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review.

Authors:  Abdul-Hamid Emwas; Claudio Luchinat; Paola Turano; Leonardo Tenori; Raja Roy; Reza M Salek; Danielle Ryan; Jasmeen S Merzaban; Rima Kaddurah-Daouk; Ana Carolina Zeri; G A Nagana Gowda; Daniel Raftery; Yulan Wang; Lorraine Brennan; David S Wishart
Journal:  Metabolomics       Date:  2014-11-21       Impact factor: 4.290

Review 7.  Integrative metabolomics as emerging tool to study autophagy regulation.

Authors:  Sarah Stryeck; Ruth Birner-Gruenberger; Tobias Madl
Journal:  Microb Cell       Date:  2017-07-13

8.  High-resolution quantitative metabolome analysis of urine by automated flow injection NMR.

Authors:  Laeticia Da Silva; Markus Godejohann; François-Pierre J Martin; Sebastiano Collino; Alexander Bürkle; María Moreno-Villanueva; Jürgen Bernhardt; Olivier Toussaint; Beatrix Grubeck-Loebenstein; Efstathios S Gonos; Ewa Sikora; Tilman Grune; Nicolle Breusing; Claudio Franceschi; Antti Hervonen; Manfred Spraul; Sofia Moco
Journal:  Anal Chem       Date:  2013-05-29       Impact factor: 6.986

  8 in total

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