Literature DB >> 19682465

DNA polymerases at the eukaryotic fork-20 years later.

Youri I Pavlov1, Polina V Shcherbakova.   

Abstract

Function of the eukaryotic genome depends on efficient and accurate replication of anti-parallel DNA strands. Eukaryotic DNA polymerases have different properties adapted to perform a wide spectrum of DNA transactions. Here we focus on major players in the bulk replication, DNA polymerases of the B-family. We review the organization of the replication fork in eukaryotes in a historical perspective, analyze contemporary models and propose a new integrative model of the fork. Copyright (c) 2009 Elsevier B.V. All rights reserved.

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Year:  2009        PMID: 19682465      PMCID: PMC2822129          DOI: 10.1016/j.mrfmmm.2009.08.002

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  99 in total

1.  Checkpoint-dependent activation of mutagenic repair in Saccharomyces cerevisiae pol3-01 mutants.

Authors:  A Datta; J L Schmeits; N S Amin; P J Lau; K Myung; R D Kolodner
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

2.  Evidence for extrinsic exonucleolytic proofreading.

Authors:  Stephanie A Nick McElhinny; Youri I Pavlov; Thomas A Kunkel
Journal:  Cell Cycle       Date:  2006-05-01       Impact factor: 4.534

3.  Division of labor at the eukaryotic replication fork.

Authors:  Stephanie A Nick McElhinny; Dmitry A Gordenin; Carrie M Stith; Peter M J Burgers; Thomas A Kunkel
Journal:  Mol Cell       Date:  2008-04-25       Impact factor: 17.970

4.  Components and dynamics of DNA replication complexes in S. cerevisiae: redistribution of MCM proteins and Cdc45p during S phase.

Authors:  O M Aparicio; D M Weinstein; S P Bell
Journal:  Cell       Date:  1997-10-03       Impact factor: 41.582

5.  The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability.

Authors:  Y H Jin; R Obert; P M Burgers; T A Kunkel; M A Resnick; D A Gordenin
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

6.  Dpb11 controls the association between DNA polymerases alpha and epsilon and the autonomously replicating sequence region of budding yeast.

Authors:  H Masumoto; A Sugino; H Araki
Journal:  Mol Cell Biol       Date:  2000-04       Impact factor: 4.272

7.  DNA polymerases alpha, delta, and epsilon localize and function together at replication forks in Saccharomyces cerevisiae.

Authors:  Shin-Ichiro Hiraga; Aki Hagihara-Hayashi; Tomoko Ohya; Akio Sugino
Journal:  Genes Cells       Date:  2005-04       Impact factor: 1.891

8.  In vivo consequences of putative active site mutations in yeast DNA polymerases alpha, epsilon, delta, and zeta.

Authors:  Y I Pavlov; P V Shcherbakova; T A Kunkel
Journal:  Genetics       Date:  2001-09       Impact factor: 4.562

9.  PCNA mono-ubiquitination and activation of translesion DNA polymerases by DNA polymerase {alpha}.

Authors:  Motoshi Suzuki; Atsuko Niimi; Siripan Limsirichaikul; Shuta Tomida; Qin Miao Huang; Shunji Izuta; Jiro Usukura; Yasutomo Itoh; Takashi Hishida; Tomohiro Akashi; Yoshiyuki Nakagawa; Akihiko Kikuchi; Youri Pavlov; Takashi Murate; Takashi Takahashi
Journal:  J Biochem       Date:  2009-03-11       Impact factor: 3.387

10.  Characterization of the two small subunits of Saccharomyces cerevisiae DNA polymerase delta.

Authors:  K J Gerik; X Li; A Pautz; P M Burgers
Journal:  J Biol Chem       Date:  1998-07-31       Impact factor: 5.157

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  55 in total

1.  DNA polymerase δ and ζ switch by sharing accessory subunits of DNA polymerase δ.

Authors:  Andrey G Baranovskiy; Artem G Lada; Hollie M Siebler; Yinbo Zhang; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2012-03-30       Impact factor: 5.157

2.  An end for mismatch repair.

Authors:  Gray F Crouse
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-29       Impact factor: 11.205

3.  Genome-wide model for the normal eukaryotic DNA replication fork.

Authors:  Andres A Larrea; Scott A Lujan; Stephanie A Nick McElhinny; Piotr A Mieczkowski; Michael A Resnick; Dmitry A Gordenin; Thomas A Kunkel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

Review 4.  Non-canonical actions of mismatch repair.

Authors:  Gray F Crouse
Journal:  DNA Repair (Amst)       Date:  2015-12-02

5.  The tail that wags the dog: p12, the smallest subunit of DNA polymerase δ, is degraded by ubiquitin ligases in response to DNA damage and during cell cycle progression.

Authors:  Marietta Y W T Lee; Sufang Zhang; Szu Hua Sharon Lin; Xiaoxiao Wang; Zbigniew Darzynkiewicz; Zhongtao Zhang; Ernest Y C Lee
Journal:  Cell Cycle       Date:  2013-12-03       Impact factor: 4.534

6.  Activity and fidelity of human DNA polymerase α depend on primer structure.

Authors:  Andrey G Baranovskiy; Vincent N Duong; Nigar D Babayeva; Yinbo Zhang; Youri I Pavlov; Karen S Anderson; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2018-03-19       Impact factor: 5.157

7.  A novel variant of DNA polymerase ζ, Rev3ΔC, highlights differential regulation of Pol32 as a subunit of polymerase δ versus ζ in Saccharomyces cerevisiae.

Authors:  Hollie M Siebler; Artem G Lada; Andrey G Baranovskiy; Tahir H Tahirov; Youri I Pavlov
Journal:  DNA Repair (Amst)       Date:  2014-05-10

8.  A cancer-associated DNA polymerase delta variant modeled in yeast causes a catastrophic increase in genomic instability.

Authors:  Danielle L Daee; Tony M Mertz; Polina V Shcherbakova
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

Review 9.  DNA polymerase delta in DNA replication and genome maintenance.

Authors:  Marc J Prindle; Lawrence A Loeb
Journal:  Environ Mol Mutagen       Date:  2012-10-13       Impact factor: 3.216

10.  PCNA is efficiently loaded on the DNA recombination intermediate to modulate polymerase δ, η, and ζ activities.

Authors:  Jian Li; Donald L Holzschu; Tomohiko Sugiyama
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

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