Literature DB >> 16687920

Evidence for extrinsic exonucleolytic proofreading.

Stephanie A Nick McElhinny1, Youri I Pavlov, Thomas A Kunkel.   

Abstract

Exonucleolytic proofreading of DNA synthesis errors is one of the major determinants of genome stability. However, many DNA transactions that contribute to genome stability require synthesis by polymerases that naturally lack intrinsic 3' exonuclease activity and some of which are highly inaccurate. Here we discuss evidence that errors made by these polymerases may be edited by a separate 3' exonuclease, and we consider how such extrinsic proofreading may differ from proofreading by exonucleases that are intrinsic to replicative DNA polymerases.

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Year:  2006        PMID: 16687920      PMCID: PMC2907748          DOI: 10.4161/cc.5.9.2736

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  40 in total

1.  Identification and expression of the TREX1 and TREX2 cDNA sequences encoding mammalian 3'-->5' exonucleases.

Authors:  D J Mazur; F W Perrino
Journal:  J Biol Chem       Date:  1999-07-09       Impact factor: 5.157

Review 2.  Functions of DNA polymerases.

Authors:  Katarzyna Bebenek; Thomas A Kunkel
Journal:  Adv Protein Chem       Date:  2004

Review 3.  Cellular functions of DNA polymerase zeta and Rev1 protein.

Authors:  Christopher W Lawrence
Journal:  Adv Protein Chem       Date:  2004

Review 4.  Fidelity mechanisms in DNA replication.

Authors:  H Echols; M F Goodman
Journal:  Annu Rev Biochem       Date:  1991       Impact factor: 23.643

5.  Examination of the role of DNA polymerase proofreading in the mutator effect of miscoding tRNAs.

Authors:  M M Slupska; A G King; L I Lu; R H Lin; E F Mao; C A Lackey; J H Chiang; C Baikalov; J H Miller
Journal:  J Bacteriol       Date:  1998-11       Impact factor: 3.490

6.  A human DNA editing enzyme homologous to the Escherichia coli DnaQ/MutD protein.

Authors:  M Höss; P Robins; T J Naven; D J Pappin; J Sgouros; T Lindahl
Journal:  EMBO J       Date:  1999-07-01       Impact factor: 11.598

7.  Dynamics of bacteriophage T4 DNA polymerase function: identification of amino acid residues that affect switching between polymerase and 3' --> 5' exonuclease activities.

Authors:  S A Stocki; R L Nonay; L J Reha-Krantz
Journal:  J Mol Biol       Date:  1995-11-17       Impact factor: 5.469

8.  Base selection, proofreading, and mismatch repair during DNA replication in Escherichia coli.

Authors:  R M Schaaper
Journal:  J Biol Chem       Date:  1993-11-15       Impact factor: 5.157

9.  Hydrolysis of 3'-terminal mispairs in vitro by the 3'----5' exonuclease of DNA polymerase delta permits subsequent extension by DNA polymerase alpha.

Authors:  F W Perrino; L A Loeb
Journal:  Biochemistry       Date:  1990-06-05       Impact factor: 3.162

10.  The 3'-->5' exonucleases of DNA polymerases delta and epsilon and the 5'-->3' exonuclease Exo1 have major roles in postreplication mutation avoidance in Saccharomyces cerevisiae.

Authors:  H T Tran; D A Gordenin; M A Resnick
Journal:  Mol Cell Biol       Date:  1999-03       Impact factor: 4.272

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  33 in total

Review 1.  The role of DNA exonucleases in protecting genome stability and their impact on ageing.

Authors:  Penelope A Mason; Lynne S Cox
Journal:  Age (Dordr)       Date:  2011-09-23

2.  Differential correction of lagging-strand replication errors made by DNA polymerases {alpha} and {delta}.

Authors:  Stephanie A Nick McElhinny; Grace E Kissling; Thomas A Kunkel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

Review 3.  Mechanisms of RecQ helicases in pathways of DNA metabolism and maintenance of genomic stability.

Authors:  Sudha Sharma; Kevin M Doherty; Robert M Brosh
Journal:  Biochem J       Date:  2006-09-15       Impact factor: 3.857

Review 4.  The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases.

Authors:  Scott D McCulloch; Thomas A Kunkel
Journal:  Cell Res       Date:  2008-01       Impact factor: 25.617

5.  Quantifying the contributions of base selectivity, proofreading and mismatch repair to nuclear DNA replication in Saccharomyces cerevisiae.

Authors:  Jordan A St Charles; Sascha E Liberti; Jessica S Williams; Scott A Lujan; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2015-04-25

Review 6.  Mitochondrial genome maintenance in health and disease.

Authors:  William C Copeland; Matthew J Longley
Journal:  DNA Repair (Amst)       Date:  2014-04-26

Review 7.  Eukaryotic Mismatch Repair in Relation to DNA Replication.

Authors:  Thomas A Kunkel; Dorothy A Erie
Journal:  Annu Rev Genet       Date:  2015       Impact factor: 16.830

Review 8.  Evolving views of DNA replication (in)fidelity.

Authors:  T A Kunkel
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2009-11-10

9.  Delivering nonidentical twins.

Authors:  Thomas A Kunkel; Peter M Burgers
Journal:  Nat Struct Mol Biol       Date:  2014-07-06       Impact factor: 15.369

10.  DNA damage alters DNA polymerase delta to a form that exhibits increased discrimination against modified template bases and mismatched primers.

Authors:  Xiao Meng; Yajing Zhou; Sufang Zhang; Ernest Y C Lee; David N Frick; Marietta Y W T Lee
Journal:  Nucleic Acids Res       Date:  2008-12-11       Impact factor: 16.971

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