Literature DB >> 22465957

DNA polymerase δ and ζ switch by sharing accessory subunits of DNA polymerase δ.

Andrey G Baranovskiy1, Artem G Lada, Hollie M Siebler, Yinbo Zhang, Youri I Pavlov, Tahir H Tahirov.   

Abstract

Translesion DNA synthesis is an important branch of the DNA damage tolerance pathway that assures genomic integrity of living organisms. The mechanisms of DNA polymerase (Pol) switches during lesion bypass are not known. Here, we show that the C-terminal domain of the Pol ζ catalytic subunit interacts with accessory subunits of replicative DNA Pol δ. We also show that, unlike other members of the human B-family of DNA polymerases, the highly conserved and similar C-terminal domains of Pol δ and Pol ζ contain a [4Fe-4S] cluster coordinated by four cysteines. Amino acid changes in Pol ζ that prevent the assembly of the [4Fe-4S] cluster abrogate Pol ζ function in UV mutagenesis. On the basis of these data, we propose that Pol switches at replication-blocking lesions occur by the exchange of the Pol δ and Pol ζ catalytic subunits on a preassembled complex of accessory proteins retained on DNA during translesion DNA synthesis.

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Year:  2012        PMID: 22465957      PMCID: PMC3366816          DOI: 10.1074/jbc.M112.351122

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  44 in total

Review 1.  Translesion DNA synthesis in eukaryotes: a one- or two-polymerase affair.

Authors:  Satya Prakash; Louise Prakash
Journal:  Genes Dev       Date:  2002-08-01       Impact factor: 11.361

2.  The C-terminal zinc finger of the catalytic subunit of DNA polymerase delta is responsible for direct interaction with the B-subunit.

Authors:  Javier Sanchez Garcia; Leonora F Ciufo; Xiaowen Yang; Stephen E Kearsey; Stuart A MacNeill
Journal:  Nucleic Acids Res       Date:  2004-06-01       Impact factor: 16.971

3.  POL32, a subunit of the Saccharomyces cerevisiae DNA polymerase delta, defines a link between DNA replication and the mutagenic bypass repair pathway.

Authors:  M E Huang; A de Calignon; A Nicolas; F Galibert
Journal:  Curr Genet       Date:  2000-11       Impact factor: 3.886

4.  Endonuclease III is an iron-sulfur protein.

Authors:  R P Cunningham; H Asahara; J F Bank; C P Scholes; J C Salerno; K Surerus; E Münck; J McCracken; J Peisach; M H Emptage
Journal:  Biochemistry       Date:  1989-05-16       Impact factor: 3.162

5.  An iron-sulfur cluster in the family 4 uracil-DNA glycosylases.

Authors:  John A Hinks; Michael C W Evans; Yolanda De Miguel; Alessandro A Sartori; Josef Jiricny; Laurence H Pearl
Journal:  J Biol Chem       Date:  2002-02-27       Impact factor: 5.157

6.  The Pol32 subunit of DNA polymerase delta contains separable domains for processive replication and proliferating cell nuclear antigen (PCNA) binding.

Authors:  Erik Johansson; Parie Garg; Peter M J Burgers
Journal:  J Biol Chem       Date:  2003-10-31       Impact factor: 5.157

7.  Yeast recombination: the association between double-strand gap repair and crossing-over.

Authors:  T L Orr-Weaver; J W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205

8.  HYS2, an essential gene required for DNA replication in Saccharomyces cerevisiae.

Authors:  K Sugimoto; Y Sakamoto; O Takahashi; K Matsumoto
Journal:  Nucleic Acids Res       Date:  1995-09-11       Impact factor: 16.971

9.  A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance.

Authors:  J D Boeke; F LaCroute; G R Fink
Journal:  Mol Gen Genet       Date:  1984

10.  Eukaryotic DNA polymerases require an iron-sulfur cluster for the formation of active complexes.

Authors:  Daili J A Netz; Carrie M Stith; Martin Stümpfig; Gabriele Köpf; Daniel Vogel; Heide M Genau; Joseph L Stodola; Roland Lill; Peter M J Burgers; Antonio J Pierik
Journal:  Nat Chem Biol       Date:  2011-11-27       Impact factor: 15.040

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  101 in total

1.  Pol31 and Pol32 subunits of yeast DNA polymerase δ are also essential subunits of DNA polymerase ζ.

Authors:  Robert E Johnson; Louise Prakash; Satya Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

2.  Insight into the Human DNA Primase Interaction with Template-Primer.

Authors:  Andrey G Baranovskiy; Yinbo Zhang; Yoshiaki Suwa; Jianyou Gu; Nigar D Babayeva; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2015-12-28       Impact factor: 5.157

Review 3.  Replicative DNA polymerases.

Authors:  Erik Johansson; Nicholas Dixon
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-06-01       Impact factor: 10.005

4.  Fate of the replisome following arrest by UV-induced DNA damage in Escherichia coli.

Authors:  H Arthur Jeiranian; Brandy J Schalow; Charmain T Courcelle; Justin Courcelle
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-25       Impact factor: 11.205

5.  The architecture of yeast DNA polymerase ζ.

Authors:  Yacob Gómez-Llorente; Radhika Malik; Rinku Jain; Jayati Roy Choudhury; Robert E Johnson; Louise Prakash; Satya Prakash; Iban Ubarretxena-Belandia; Aneel K Aggarwal
Journal:  Cell Rep       Date:  2013-10-10       Impact factor: 9.423

6.  Crystal Structure of the Human Pol α B Subunit in Complex with the C-terminal Domain of the Catalytic Subunit.

Authors:  Yoshiaki Suwa; Jianyou Gu; Andrey G Baranovskiy; Nigar D Babayeva; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2015-04-06       Impact factor: 5.157

7.  Crystal structure of the human primase.

Authors:  Andrey G Baranovskiy; Yinbo Zhang; Yoshiaki Suwa; Nigar D Babayeva; Jianyou Gu; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2014-12-30       Impact factor: 5.157

8.  A novel variant of DNA polymerase ζ, Rev3ΔC, highlights differential regulation of Pol32 as a subunit of polymerase δ versus ζ in Saccharomyces cerevisiae.

Authors:  Hollie M Siebler; Artem G Lada; Andrey G Baranovskiy; Tahir H Tahirov; Youri I Pavlov
Journal:  DNA Repair (Amst)       Date:  2014-05-10

Review 9.  DNA polymerase delta in DNA replication and genome maintenance.

Authors:  Marc J Prindle; Lawrence A Loeb
Journal:  Environ Mol Mutagen       Date:  2012-10-13       Impact factor: 3.216

10.  PCNA is efficiently loaded on the DNA recombination intermediate to modulate polymerase δ, η, and ζ activities.

Authors:  Jian Li; Donald L Holzschu; Tomohiko Sugiyama
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

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