Literature DB >> 19681091

Are the catalytic properties of enzymes from piezophilic organisms pressure adapted?

Sam Hay1, Rhiannon M Evans, Colin Levy, E Joel Loveridge, Xi Wang, David Leys, Rudolf K Allemann, Nigel S Scrutton.   

Abstract

We report the crystal structure of dihydrofolate reductase (DHFR) from the psychropiezophilic bacterium Moritella profunda, which was isolated from the deep ocean at 2 degrees C and 280 bar. The structure is typical of a chromosomal DHFR and we were unable to identify any obvious structural features that would suggest pressure adaptation. In particular, the core regions of the enzyme are virtually identical to those of the DHFR from the mesophile Escherichia coli. The steady-state rate at pH 9, which is limited by hydride transfer at atmospheric pressure, is roughly constant between 1 and 750 bar, falling at higher pressures. However, the value of K(M) increases with increasing pressure, and as a result k(cat)/K(M) decreases over the entire pressure range studied. Isotope effect studies showed that increasing the pressure causes a change in the rate-limiting step of the reaction. We therefore see no evidence of pressure adaptation in either the structure or the activity of this enzyme.

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Year:  2009        PMID: 19681091     DOI: 10.1002/cbic.200900367

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  19 in total

1.  Comparative study on dihydrofolate reductases from Shewanella species living in deep-sea and ambient atmospheric-pressure environments.

Authors:  Chiho Murakami; Eiji Ohmae; Shin-ichi Tate; Kunihiko Gekko; Kaoru Nakasone; Chiaki Kato
Journal:  Extremophiles       Date:  2010-12-23       Impact factor: 2.395

2.  Unraveling the role of protein dynamics in dihydrofolate reductase catalysis.

Authors:  Louis Y P Luk; J Javier Ruiz-Pernía; William M Dawson; Maite Roca; E Joel Loveridge; David R Glowacki; Jeremy N Harvey; Adrian J Mulholland; Iñaki Tuñón; Vicent Moliner; Rudolf K Allemann
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-24       Impact factor: 11.205

3.  Role of cavities and hydration in the pressure unfolding of T4 lysozyme.

Authors:  Nathaniel V Nucci; Brian Fuglestad; Evangelia A Athanasoula; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

Review 4.  Antifolate agents: a patent review (2006 - 2010).

Authors:  Dennis L Wright; Amy C Anderson
Journal:  Expert Opin Ther Pat       Date:  2011-05-27       Impact factor: 6.674

5.  Molecular modeling approach to predict a binding mode for the complex methotrexate-carboxypeptidase G2.

Authors:  Kely Medeiros Turra; Kerly Fernanda Mesquita Pasqualoto; Elizabeth Igne Ferreira; Daniela Gonçales Rando
Journal:  J Mol Model       Date:  2011-08-25       Impact factor: 1.810

6.  Adaptations for Pressure and Temperature Effects on Loop Motion in Escherichia coli and Moritella profunda Dihydrofolate Reductase.

Authors:  Qi Huang; Jocelyn M Rodgers; Russell J Hemley; Toshiko Ichiye
Journal:  High Press Res       Date:  2019-03-05       Impact factor: 1.431

7.  Effects of pressure and temperature on the binding of RecA protein to single-stranded DNA.

Authors:  Jack Merrin; Pradeep Kumar; Albert Libchaber
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

8.  Update 1 of: Tunneling and dynamics in enzymatic hydride transfer.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Chem Rev       Date:  2010-12-08       Impact factor: 60.622

Review 9.  Enzymes from piezophiles.

Authors:  Toshiko Ichiye
Journal:  Semin Cell Dev Biol       Date:  2018-02-01       Impact factor: 7.727

10.  Reduced susceptibility of Moritella profunda dihydrofolate reductase to trimethoprim is not due to glutamate 28.

Authors:  E Joel Loveridge; William M Dawson; Rhiannon M Evans; Anna Sobolewska; Rudolf K Allemann
Journal:  Protein J       Date:  2011-12       Impact factor: 2.371

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