Literature DB >> 19673208

Computer-aided diagnosis of pulmonary nodules on CT scans: improvement of classification performance with nodule surface features.

Ted W Way1, Berkman Sahiner, Heang-Ping Chan, Lubomir Hadjiiski, Philip N Cascade, Aamer Chughtai, Naama Bogot, Ella Kazerooni.   

Abstract

The purpose of this work is to develop a computer-aided diagnosis (CAD) system to differentiate malignant and benign lung nodules on CT scans. A fully automated system was designed to segment the nodule from its surrounding structured background in a local volume of interest (VOI) and to extract image features for classification. Image segmentation was performed with a 3D active contour method. The initial contour was obtained as the boundary of a binary object generated by k-means clustering within the VOI and smoothed by morphological opening. A data set of 256 lung nodules (124 malignant and 132 benign) from 152 patients was used in this study. In addition to morphological and texture features, the authors designed new nodule surface features to characterize the lung nodule surface smoothness and shape irregularity. The effects of two demographic features, age and gender, as adjunct to the image features were also investigated. A linear discriminant analysis (LDA) classifier built with features from stepwise feature selection was trained using simplex optimization to select the most effective features. A two-loop leave-one-out resampling scheme was developed to reduce the optimistic bias in estimating the test performance of the CAD system. The area under the receiver operating characteristic curve, A(z), for the test cases improved significantly (p < 0.05) from 0.821 +/- 0.026 to 0.857 +/- 0.023 when the newly developed image features were included with the original morphological and texture features. A similar experiment performed on the data set restricted to primary cancers and benign nodules, excluding the metastatic cancers, also resulted in an improved test A(z), though the improvement did not reach statistical significance (p = 0.07). The two demographic features did not significantly affect the performance of the CAD system (p > 0.05) when they were added to the feature space containing the morphological, texture, and new gradient field and radius features. To investigate if a support vector machine (SVM) classifier can achieve improved performance over the LDA classifier, we compared the performance of the LDA and SVMs with various kernels and parameters. Principal component analysis was used to reduce the dimensionality of the feature space for both the LDA and the SVM classifiers. When the number of selected principal components was varied, the highest test A(z) among the SVMs of various kernels and parameters was slightly higher than that of the LDA in one-loop leave-one-case-out resampling. However, no SVM with fixed architecture consistently performed better than the LDA in the range of principal components selected. This study demonstrated that the authors' proposed segmentation and feature extraction techniques are promising for classifying lung nodules on CT images.

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Mesh:

Year:  2009        PMID: 19673208      PMCID: PMC2832039          DOI: 10.1118/1.3140589

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  28 in total

1.  Classifier design for computer-aided diagnosis: effects of finite sample size on the mean performance of classical and neural network classifiers.

Authors:  H P Chan; B Sahiner; R F Wagner; N Petrick
Journal:  Med Phys       Date:  1999-12       Impact factor: 4.071

2.  Computer-aided diagnosis to distinguish benign from malignant solitary pulmonary nodules on radiographs: ROC analysis of radiologists' performance--initial experience.

Authors:  Junji Shiraishi; Hiroyuki Abe; Roger Engelmann; Masahito Aoyama; Heber MacMahon; Kunio Doi
Journal:  Radiology       Date:  2003-05       Impact factor: 11.105

Review 3.  Clinical practice. The solitary pulmonary nodule.

Authors:  David Ost; Alan M Fein; Steven H Feinsilver
Journal:  N Engl J Med       Date:  2003-06-19       Impact factor: 91.245

4.  Automated lung nodule classification following automated nodule detection on CT: a serial approach.

Authors:  Samuel G Armato; Michael B Altman; Joel Wilkie; Shusuke Sone; Feng Li; Kunio Doi; Arunabha S Roy
Journal:  Med Phys       Date:  2003-06       Impact factor: 4.071

5.  Effect of CT scanning parameters on volumetric measurements of pulmonary nodules by 3D active contour segmentation: a phantom study.

Authors:  Ted W Way; Heang-Ping Chan; Mitchell M Goodsitt; Berkman Sahiner; Lubomir M Hadjiiski; Chuan Zhou; Aamer Chughtai
Journal:  Phys Med Biol       Date:  2008-02-13       Impact factor: 3.609

6.  Computerized scheme for determination of the likelihood measure of malignancy for pulmonary nodules on low-dose CT images.

Authors:  Masahito Aoyama; Qiang Li; Shigehiko Katsuragawa; Feng Li; Shusuke Sone; Kunio Doi
Journal:  Med Phys       Date:  2003-03       Impact factor: 4.071

7.  Screening for early lung cancer with low-dose spiral CT: prevalence in 817 asymptomatic smokers.

Authors:  Stefan Diederich; Dag Wormanns; Michael Semik; Michael Thomas; Horst Lenzen; Nikolaus Roos; Walter Heindel
Journal:  Radiology       Date:  2002-03       Impact factor: 11.105

8.  Lung cancer screening with CT: Mayo Clinic experience.

Authors:  Stephen J Swensen; James R Jett; Thomas E Hartman; David E Midthun; Jeff A Sloan; Anne-Marie Sykes; Gregory L Aughenbaugh; Medy A Clemens
Journal:  Radiology       Date:  2003-01-24       Impact factor: 11.105

9.  Lung cancer screening using low-dose spiral CT: results of baseline and 1-year follow-up studies.

Authors:  Takeshi Nawa; Tohru Nakagawa; Suzushi Kusano; Yoshimichi Kawasaki; Youichi Sugawara; Hajime Nakata
Journal:  Chest       Date:  2002-07       Impact factor: 9.410

10.  Results of three-year mass screening programme for lung cancer using mobile low-dose spiral computed tomography scanner.

Authors:  S Sone; F Li; Z G Yang; T Honda; Y Maruyama; S Takashima; M Hasegawa; S Kawakami; K Kubo; M Haniuda; T Yamanda
Journal:  Br J Cancer       Date:  2001-01-05       Impact factor: 7.640

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  48 in total

1.  Characterization of masses in digital breast tomosynthesis: comparison of machine learning in projection views and reconstructed slices.

Authors:  Heang-Ping Chan; Yi-Ta Wu; Berkman Sahiner; Jun Wei; Mark A Helvie; Yiheng Zhang; Richard H Moore; Daniel B Kopans; Lubomir Hadjiiski; Ted Way
Journal:  Med Phys       Date:  2010-07       Impact factor: 4.071

2.  Improved pulmonary nodule classification utilizing quantitative lung parenchyma features.

Authors:  Samantha K N Dilger; Johanna Uthoff; Alexandra Judisch; Emily Hammond; Sarah L Mott; Brian J Smith; John D Newell; Eric A Hoffman; Jessica C Sieren
Journal:  J Med Imaging (Bellingham)       Date:  2015-09-01

3.  Post-imaging pulmonary nodule mathematical prediction models: are they clinically relevant?

Authors:  Johanna Uthoff; Nicholas Koehn; Jared Larson; Samantha K N Dilger; Emily Hammond; Ann Schwartz; Brian Mullan; Rolando Sanchez; Richard M Hoffman; Jessica C Sieren
Journal:  Eur Radiol       Date:  2019-04-01       Impact factor: 5.315

4.  Machine Learning in Computer-aided Diagnosis of the Thorax and Colon in CT: A Survey.

Authors:  Kenji Suzuki
Journal:  IEICE Trans Inf Syst       Date:  2013-04-01

5.  Computer-aided diagnosis systems for lung cancer: challenges and methodologies.

Authors:  Ayman El-Baz; Garth M Beache; Georgy Gimel'farb; Kenji Suzuki; Kazunori Okada; Ahmed Elnakib; Ahmed Soliman; Behnoush Abdollahi
Journal:  Int J Biomed Imaging       Date:  2013-01-29

6.  Toward Understanding the Size Dependence of Shape Features for Predicting Spiculation in Lung Nodules for Computer-Aided Diagnosis.

Authors:  Ron Niehaus; Daniela Stan Raicu; Jacob Furst; Samuel Armato
Journal:  J Digit Imaging       Date:  2015-12       Impact factor: 4.056

Review 7.  Overview of deep learning in medical imaging.

Authors:  Kenji Suzuki
Journal:  Radiol Phys Technol       Date:  2017-07-08

8.  Computer-aided diagnosis system for lung nodules based on computed tomography using shape analysis, a genetic algorithm, and SVM.

Authors:  Antonio Oseas de Carvalho Filho; Aristófanes Corrêa Silva; Anselmo Cardoso de Paiva; Rodolfo Acatauassú Nunes; Marcelo Gattass
Journal:  Med Biol Eng Comput       Date:  2016-10-03       Impact factor: 2.602

9.  A review of computer-aided diagnosis in thoracic and colonic imaging.

Authors:  Kenji Suzuki
Journal:  Quant Imaging Med Surg       Date:  2012-09

10.  Test-retest reproducibility analysis of lung CT image features.

Authors:  Yoganand Balagurunathan; Virendra Kumar; Yuhua Gu; Jongphil Kim; Hua Wang; Ying Liu; Dmitry B Goldgof; Lawrence O Hall; Rene Korn; Binsheng Zhao; Lawrence H Schwartz; Satrajit Basu; Steven Eschrich; Robert A Gatenby; Robert J Gillies
Journal:  J Digit Imaging       Date:  2014-12       Impact factor: 4.056

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