Literature DB >> 19665886

The role of solution NMR in the structure determinations of VDAC-1 and other membrane proteins.

Sebastian Hiller1, Gerhard Wagner.   

Abstract

The voltage-dependent anion channel (VDAC) is an essential protein in the eukaryotic outer mitochondrial membrane, providing the pore for substrate diffusion. Three high-resolution structures of the isoform 1 of VDAC in detergent micelles and bicelles have recently been published, using solution NMR and X-ray crystallography. They resolve longstanding discussions about the membrane topology of VDAC and provide the first eukaryotic beta-barrel membrane protein structure. The structure contains a surprising feature that had not been observed in an integral membrane protein before: A parallel beta-strand pairing and thus an odd number of strands. The studies also give a structural and functional basis for the voltage gating mechanism of VDAC and its modulation by NADH; however, they do not fully explain these functions yet. With the de novo structure of VDAC-1, as well as those of half a dozen other proteins, the number of integral membrane protein structures solved by solution NMR has doubled in the past two years. Numerous further structural and functional studies on many different membrane proteins show that solution NMR has become an important tool for membrane protein molecular biology.

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Year:  2009        PMID: 19665886      PMCID: PMC2739811          DOI: 10.1016/j.sbi.2009.07.013

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  42 in total

Review 1.  VDAC channels.

Authors:  E Blachly-Dyson; M Forte
Journal:  IUBMB Life       Date:  2001 Sep-Nov       Impact factor: 3.885

Review 2.  The structure of bacterial outer membrane proteins.

Authors:  Georg E Schulz
Journal:  Biochim Biophys Acta       Date:  2002-10-11

3.  Structure of outer membrane protein A transmembrane domain by NMR spectroscopy.

Authors:  A Arora; F Abildgaard; J H Bushweller; L K Tamm
Journal:  Nat Struct Biol       Date:  2001-04

Review 4.  The voltage-dependent anion channel: characterization, modulation, and role in mitochondrial function in cell life and death.

Authors:  Varda Shoshan-Barmatz; Dan Gincel
Journal:  Cell Biochem Biophys       Date:  2003       Impact factor: 2.194

5.  An evaluation of detergents for NMR structural studies of membrane proteins.

Authors:  Ray D Krueger-Koplin; Paul L Sorgen; Suzanne T Krueger-Koplin; Iván O Rivera-Torres; Sean M Cahill; David B Hicks; Leo Grinius; Terry A Krulwich; Mark E Girvin
Journal:  J Biomol NMR       Date:  2004-01       Impact factor: 2.835

6.  The topology of VDAC as probed by biotin modification.

Authors:  J Song; C Midson; E Blachly-Dyson; M Forte; M Colombini
Journal:  J Biol Chem       Date:  1998-09-18       Impact factor: 5.157

7.  A 3D model of the voltage-dependent anion channel (VDAC).

Authors:  Rita Casadio; Irene Jacoboni; Angela Messina; Vito De Pinto
Journal:  FEBS Lett       Date:  2002-06-05       Impact factor: 4.124

Review 8.  Membrane protein folding on the example of outer membrane protein A of Escherichia coli.

Authors:  J H Kleinschmidt
Journal:  Cell Mol Life Sci       Date:  2003-08       Impact factor: 9.261

Review 9.  NMR solution structure determination of membrane proteins reconstituted in detergent micelles.

Authors:  César Fernández; Kurt Wüthrich
Journal:  FEBS Lett       Date:  2003-11-27       Impact factor: 4.124

10.  Solution structure and dynamics of the outer membrane enzyme PagP by NMR.

Authors:  Peter M Hwang; Wing-Yiu Choy; Eileen I Lo; Lu Chen; Julie D Forman-Kay; Christian R H Raetz; Gilbert G Privé; Russell E Bishop; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-30       Impact factor: 11.205

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  31 in total

1.  Bacterial expression, purification and characterization of a rice voltage-dependent, anion-selective channel isoform, OsVDAC4.

Authors:  Ashwini Godbole; Rohan Mitra; Ashvini K Dubey; Palakolanu S Reddy; M K Mathew
Journal:  J Membr Biol       Date:  2011-11-06       Impact factor: 1.843

2.  Affixing N-terminal α-helix to the wall of the voltage-dependent anion channel does not prevent its voltage gating.

Authors:  Oscar Teijido; Rachna Ujwal; Carl-Olof Hillerdal; Lisen Kullman; Tatiana K Rostovtseva; Jeff Abramson
Journal:  J Biol Chem       Date:  2012-01-24       Impact factor: 5.157

3.  Functional dynamics in the voltage-dependent anion channel.

Authors:  Saskia Villinger; Rodolfo Briones; Karin Giller; Ulrich Zachariae; Adam Lange; Bert L de Groot; Christian Griesinger; Stefan Becker; Markus Zweckstetter
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-10       Impact factor: 11.205

4.  NMR-based conformational ensembles explain pH-gated opening and closing of OmpG channel.

Authors:  Tiandi Zhuang; Christina Chisholm; Min Chen; Lukas K Tamm
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

Review 5.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

Review 6.  Structural Variability in the RLR-MAVS Pathway and Sensitive Detection of Viral RNAs.

Authors:  Qiu-Xing Jiang
Journal:  Med Chem       Date:  2019       Impact factor: 2.745

7.  Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein.

Authors:  Shenlin Wang; Rachel A Munro; Lichi Shi; Izuru Kawamura; Takashi Okitsu; Akimori Wada; So-Young Kim; Kwang-Hwan Jung; Leonid S Brown; Vladimir Ladizhansky
Journal:  Nat Methods       Date:  2013-09-08       Impact factor: 28.547

8.  Antimicrobial peptide protegrin-3 adopt an antiparallel dimer in the presence of DPC micelles: a high-resolution NMR study.

Authors:  K S Usachev; S V Efimov; O A Kolosova; E A Klochkova; A V Aganov; V V Klochkov
Journal:  J Biomol NMR       Date:  2015-03-19       Impact factor: 2.835

9.  Lipid dynamics and protein-lipid interactions in 2D crystals formed with the β-barrel integral membrane protein VDAC1.

Authors:  Matthew T Eddy; Ta-Chung Ong; Lindsay Clark; Oscar Teijido; Patrick C A van der Wel; Robert Garces; Gerhard Wagner; Tatiana K Rostovtseva; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2012-03-30       Impact factor: 15.419

Review 10.  Nonmicellar systems for solution NMR spectroscopy of membrane proteins.

Authors:  Thomas Raschle; Sebastian Hiller; Manuel Etzkorn; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2010-08       Impact factor: 6.809

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