Literature DB >> 19639158

Site-specific dynamic nuclear polarization of hydration water as a generally applicable approach to monitor protein aggregation.

Anna Pavlova1, Evan R McCarney, Dylan W Peterson, Frederick W Dahlquist, John Lew, Songi Han.   

Abstract

We present a generally applicable approach for monitoring protein aggregation by detecting changes in surface hydration water dynamics and the changes in solvent accessibility of specific protein sites, as protein aggregation proceeds in solution state. This is made possible through the Overhauser dynamic nuclear polarization (DNP) of water interacting with stable nitroxide spin labels tethered to specific proteins sites. This effect is highly localized due to the magnetic dipolar nature of the electron-proton spin interaction, with >80% of their interaction occurring within 5 A between the unpaired electron of the spin label and the proton of water. We showcase our tool on the aggregation of tau proteins, whose fibrillization is linked to neurodegenerative disease pathologies known as taupathies. We demonstrate that the DNP approach to monitor local changes in hydration dynamics with residue specificity and local contrast can distinguish specific and neat protein-protein packing leading to fibers from non-specific protein agglomeration or precipitation. The ability to monitor tau assembly with local, residue-specific, resolution, under ambient conditions and in solution state will help unravel the mechanism and structural characteristics of the gradual process of tau aggregation into amyloid fibers, which remains unclear to this day.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19639158      PMCID: PMC3153360          DOI: 10.1039/b906101k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  34 in total

1.  Real-time observation of coiled-coil domains and subunit assembly in intermediate filaments.

Authors:  John F Hess; John C Voss; Paul G FitzGerald
Journal:  J Biol Chem       Date:  2002-07-16       Impact factor: 5.157

2.  Template-assisted filament growth by parallel stacking of tau.

Authors:  Martin Margittai; Ralf Langen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-06       Impact factor: 11.205

Review 3.  Describing the structure and assembly of protein filaments by EPR spectroscopy of spin-labeled side chains.

Authors:  Madhu Budamagunta; John Hess; Paul Fitzgerald; John Voss
Journal:  Cell Biochem Biophys       Date:  2007       Impact factor: 2.194

4.  A nucleated assembly mechanism of Alzheimer paired helical filaments.

Authors:  P Friedhoff; M von Bergen; E M Mandelkow; P Davies; E Mandelkow
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

5.  Polarization-enhanced NMR spectroscopy of biomolecules in frozen solution.

Authors:  D A Hall; D C Maus; G J Gerfen; S J Inati; L R Becerra; F W Dahlquist; R G Griffin
Journal:  Science       Date:  1997-05-09       Impact factor: 47.728

6.  Structure of the KcsA potassium channel from Streptomyces lividans: a site-directed spin labeling study of the second transmembrane segment.

Authors:  A Gross; L Columbus; K Hideg; C Altenbach; W L Hubbell
Journal:  Biochemistry       Date:  1999-08-10       Impact factor: 3.162

7.  Alzheimer's-disease-associated conformation of intrinsically disordered tau protein studied by intrinsically disordered protein liquid-phase competitive enzyme-linked immunosorbent assay.

Authors:  Rostislav Skrabana; Michaela Skrabanova-Khuebachova; Peter Kontsek; Michal Novak
Journal:  Anal Biochem       Date:  2006-10-19       Impact factor: 3.365

8.  Investigation of alpha-synuclein fibril structure by site-directed spin labeling.

Authors:  Min Chen; Martin Margittai; Jeannie Chen; Ralf Langen
Journal:  J Biol Chem       Date:  2007-06-15       Impact factor: 5.157

9.  A new model for Overhauser enhanced nuclear magnetic resonance using nitroxide radicals.

Authors:  Brandon D Armstrong; Songi Han
Journal:  J Chem Phys       Date:  2007-09-14       Impact factor: 3.488

10.  A soluble oligomer of tau associated with fiber formation analyzed by NMR.

Authors:  Dylan W Peterson; Hongjun Zhou; Frederick W Dahlquist; John Lew
Journal:  Biochemistry       Date:  2008-06-18       Impact factor: 3.162

View more
  15 in total

1.  Protein structural and surface water rearrangement constitute major events in the earliest aggregation stages of tau.

Authors:  Anna Pavlova; Chi-Yuan Cheng; Maia Kinnebrew; John Lew; Frederick W Dahlquist; Songi Han
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

2.  Efficient assignment and NMR analysis of an intact virus using sequential side-chain correlations and DNP sensitization.

Authors:  Ivan V Sergeyev; Boris Itin; Rivkah Rogawski; Loren A Day; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

3.  Structural insight into proteorhodopsin oligomers.

Authors:  Katherine M Stone; Jeda Voska; Maia Kinnebrew; Anna Pavlova; Matthias J N Junk; Songi Han
Journal:  Biophys J       Date:  2013-01-22       Impact factor: 4.033

4.  Overhauser Dynamic Nuclear Polarization-Enhanced NMR Relaxometry.

Authors:  John M Franck; Ravinath Kausik; Songi Han
Journal:  Microporous Mesoporous Mater       Date:  2013-09-15       Impact factor: 5.455

Review 5.  Polarizing agents and mechanisms for high-field dynamic nuclear polarization of frozen dielectric solids.

Authors:  Kan-Nian Hu
Journal:  Solid State Nucl Magn Reson       Date:  2011-08-06       Impact factor: 2.293

6.  Narrow equilibrium window for complex coacervation of tau and RNA under cellular conditions.

Authors:  Yanxian Lin; James McCarty; Jennifer N Rauch; Kris T Delaney; Kenneth S Kosik; Glenn H Fredrickson; Joan-Emma Shea; Songi Han
Journal:  Elife       Date:  2019-04-05       Impact factor: 8.140

7.  Hydration water mobility is enhanced around tau amyloid fibers.

Authors:  Yann Fichou; Giorgio Schirò; François-Xavier Gallat; Cedric Laguri; Martine Moulin; Jérôme Combet; Michaela Zamponi; Michael Härtlein; Catherine Picart; Estelle Mossou; Hugues Lortat-Jacob; Jacques-Philippe Colletier; Douglas J Tobias; Martin Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

8.  Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.

Authors:  John M Franck; Yuan Ding; Katherine Stone; Peter Z Qin; Songi Han
Journal:  J Am Chem Soc       Date:  2015-09-10       Impact factor: 15.419

Review 9.  Quantitative cw Overhauser effect dynamic nuclear polarization for the analysis of local water dynamics.

Authors:  John M Franck; Anna Pavlova; John A Scott; Songi Han
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-07-04       Impact factor: 9.795

10.  Liquid-Liquid Phase Separation of Tau Driven by Hydrophobic Interaction Facilitates Fibrillization of Tau.

Authors:  Yanxian Lin; Yann Fichou; Andrew P Longhini; Luana C Llanes; Pengyi Yin; Guillermo C Bazan; Kenneth S Kosik; Songi Han
Journal:  J Mol Biol       Date:  2020-12-03       Impact factor: 5.469

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.