Short term persistence of human papillomavirus and risk of cervical precancer and cancer: population based cohort study.

OBJECTIVE: To evaluate the cumulative incidence of cervical intraepithelial neoplasia II or worse (grade II+) or cervical intraepithelial neoplasia grade III+ after short term persistence of prevalently detected carcinogenic human papillomavirus (HPV).
DESIGN: Population based cohort study.
SETTING: Guanacaste, Costa Rica. PARTICIPANTS: 2282 sexually active women actively followed after enrolment. MAIN OUTCOME MEASURES: Primary end points: three year and five year cumulative incidence of histologically confirmed cervical intraepithelial neoplasia grade II+ (n=70). Cervical specimens collected at each visit tested for more than 40 HPV genotypes. HPV 16, 18, 26, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, 68, 73, and 82 were considered the primary carcinogenic genotypes.
RESULTS: Women who tested positive for a carcinogenic HPV at enrolment and after about one year (9-21 months) (positive/positive) had a three year cumulative incidence of cervical intraepithelial neoplasia grade II+ of 17.0% (95% confidence interval 12.1% to 22.0%). Those who tested negative/positive (3.4%, 0.1% to 6.8%), positive/negative (1.2%, -0.2% to 2.5%), and negative/negative (0.5%, 0.1% to 0.9%) were at a significantly lower risk. There was little difference in the cumulative incidence of cervical intraepithelial neoplasia grade II+ between testing positive twice for any carcinogenic HPV genotype (same genotype or different genotypes) v testing positive twice for the same carcinogenic genotype (17.0% v 21.3%, respectively). Short term persistence of HPV 16 strongly predicted cervical intraepithelial neoplasia grade II+, with a three year cumulative incidence of 40.8% (26.4% to 55.1%). Similar patterns were observed for the five year cumulative incidence of grade II+ and for three year and five year cumulative incidence of grade III+.
CONCLUSIONS: Short term persistence of a prevalently detected carcinogenic HPV infection, especially HPV 16, strongly predicts a subsequent diagnosis of cervical intraepithelial neoplasia II+ over the next few years.

Introduction

Based on the central role of persistent infections with carcinogenic human papillomavirus (HPV) in cervical cancer, DNA testing for carcinogenic genotypes of HPV has recently been introduced into cervical cancer screening. HPV testing is more reliable1 2 and more sensitive but less specific than routinely performed cytology for detection of cervical intraepithelial neoplasia grade III and cancer (grade III+) or grade II+.3 4 5 6 7 HPV testing might soon be widely accepted as an alternative to routine cytology for cervical cancer screening.8

The enthusiasm for using carcinogenic HPV testing in primary screening, however, has been tempered by its lower predictive value or absolute risk for cervical intraepithelial neoplasia grade II+ or III+ after a positive result compared with abnormal cytology. Even in older women the prevalence of self limited carcinogenic HPV infection can reach 10%, with only a minority of at risk women developing grade II+.

Some possible ways to improve the positive predictive value after HPV primary screening have been suggested. One is to use cytology as a reflex test for women positive for carcinogenic HPV because definitely abnormal cytology is more specific for cervical intraepithelial neoplasia grade III+.9 Another possibility is HPV genotyping to target the most carcinogenic genotypes and permit the tracking of viral persistence. Separate detection of HPV 16 and 18 in cytologically normal women aged 30 and older might be useful for identifying those at an increased risk of cervical intraepithelial neoplasia grade II+.10 11 Those who test positive might benefit from immediate colposcopy, while those who test negative for both could wait a year before being screened again.10 11

Given the fundamental role of persistent HPV infection in cervical carcinogenesis, its reliable measurement could increase the accuracy of cervical cancer screening by further distinguishing carcinogenic HPV infections that pose the greatest risk from less risky infections because they have already been cleared or suppressed by the immune system. Carcinogenic HPV types that are found prevalently on screening tend to clear quickly, with about 50% undetectable within 6-12 months and most being undetectable by two years.12 13 A recent systematic review and meta-analysis of the risk posed by HPV persistence after prevalently detected infections found that the summary estimated relative risk for cervical precancer with persistent versus transient infection was 14.7, increasing to 42.9 with persistence for about one year.14 Therefore, monitoring a prevalently detected HPV infection for a year or more might be useful.18 Women with one year persistence of a specific HPV genotype remain at an increased risk of cervical precancer and cancer for several years, even if colposcopic evaluation at time zero initially fails to detect disease.5

Using data generated from a population based study, we examined the possible utility of measuring viral persistence over about a one year interval (9-21 months) and the risk of precancer and cancer over the subsequent years of follow-up. We examined whether measuring short term persistence of prevalently detected HPV infections quantifies the risk of cervical precancer and cancer, and whether different test configurations—that is, measuring persistence of a specific HPV genotype for all versus only the most carcinogenic genotypes (HPV 16 and 18)—differentiate between women at lesser and greater risk of cervical precancer and cancer.

Methods

Study population

This population based cohort study included participants from Guanacaste, Costa Rica, enrolled between June 1993 and December 1994.13 15 16 After randomly selecting about 20% of the census tracts in the region (11 742 women), 10 769 were eligible for the study. Of these, 10 049 (93.3%) provided informed written consent. Detailed methods of recruitment, screening, and follow-up have been previously published.15 16 Our cohort comprised 8545 women with baseline HPV testing and an intact cervix (fig 1). We excluded women who had undergone hysterectomy (n=630), were virgins (n=583), or refused a pelvic examination (n=291). Highly trained study nurses conducted screening visits and collected cervical specimens.

Fig 1 Flow of women through trial. High risk refers to women with positive results on screening or with risk factors (such as five or more lifetime sexual partners) for HPV or cervical neoplasia. Low risk refers to women with negative results and no risk factors. CIN= cervical intraepithelial neoplasia; PCR=polymerase chain reaction

We referred to colposcopy those women who, at the enrolment visit, had equivocal or definitely abnormal cytology (on any of three methods), abnormal direct visual examinations, or the appearance of cervical abnormalities on review of their Cervigrams, a static photographic image of the cervix. To permit individualised care outside the study protocol, we excluded from active follow-up 290 women who had some evidence of cervical intraepithelial neoplasia grade II+ at enrolment, whether or not this was confirmed histologically by colposcopy and directed biopsies.

As previously described,15 we actively followed a subcohort of sexually active women (2626/8545, 30.7%) at intervals of six or 12 months to explore risk factors for incident cervical intraepithelial neoplasia grade II+. (We included 25 women who did not have a pelvic examination at enrolment and four women who had not yet reported becoming sexually active but were older than 26 in the active follow-up, but we excluded them from this analysis based on the criteria described below.) Choice of the subcohort was based on the perceived risk of developing cervical intraepithelial neoplasia grade II+ according to screening results and colposcopy; 60.0% of these 2626 women underwent colposcopic evaluation (at a median of 95 days, mean 113 days), while others were included in the subcohort because they had five or more lifetime sexual partners or high viral load HPV infection as determined by an early HPV assay (HC Tube Test, Digene, Gaithersburg, MD). A random sample of all women with no screening abnormalities and without these risk factors15 (n=540) was also chosen for active follow-up. Thus, this subcohort represented a mixture of higher risk women (based on enrolment screening results and sexual behaviour) and was supplemented by a random sample of the remaining cohort population.

Women were initially followed annually, except for the 492 with low grade intraepithelial lesion or cervical intraepithelial neoplasia grade I at baseline, who were followed at six month intervals for increased safety of the participants. During the course of the study, as in regular clinical practice, women were shifted to accelerated screening every six months if they presented with low grade cytological or histological abnormalities.

HPV genotyping with polymerase chain reaction was performed on stored specimens. Of the 2626 eligible actively followed women, 2282 (86.9%) attended a one year follow-up visit (9-21 months) and had adequate polymerase chain reaction results at both enrolment and at their one year follow-up visit to be included in this analysis of short term persistence. This analysis included 1812 of 2100 of women (86.3%) with either screening abnormalities or risk factors (“high risk” women) and 470 of 540 randomly selected women (79.6%) with no screening abnormalities and no risk factors (“low risk” women).

Throughout the study, women with cytological, visual, or Cervigram evidence of high grade cervical neoplasia were referred to colposcopy performed by an expert colposcopist (JM). At exit, to ensure the safety of women leaving the cohort, we referred women with abnormal (atypical squamous cells of uncertain significance (ASCUS) or low grade squamous intraepithelial lesions (LSIL)) cytological interpretation; a positive Cervigram (P0 or P1) in either of the last two screening visits; or persistent carcinogenic HPV infection or HPV 16 or HPV 18 at either of the last two screening visits. Finally, a 6.25% random sample of the cohort was referred for an exit colposcopy.

Collection of specimens

Two exfoliative cervical specimens were obtained during a single pelvic examination at baseline and all follow-up visits.15 16 The first specimen was collected with a Cervex cytology broom directed at the cervical os. After preparation of conventional smears, the remaining cells were placed into PreservCyt (Cytyc) medium, from which thin layer cytology slides (ThinPrep, Cytyc Corp, Marlborough, MA) were made. A second cervical specimen was similarly collected immediately after the first by using a Dacron swab that was then stored in specimen transport medium (STM; Qiagen, Gaithersburg, MD).

HPV DNA testing

Polymerase chain reaction testing was done with DNA prepared from the stored specimen collected at each visit. To amplify HPV DNA, we used a MY09/M11 L1 degenerate primer polymerase chain reaction (MY09/11 PCR) method as described previously.17 Dot blot hybridisation of polymerase chain reaction products for HPV genotype specific detection was conducted with genotype specific oligonucleotide probes for HPV genotypes 2, 6, 11, 13, 16, 18, 26, 31-35, 39, 40, 42-45, 51-9, 61, 62, 66-74, 81-85, and 89.17 Probes for genotypes 2, 13, 34, 42-44, 54, 57, 69, 74, and 82 were also combined in dot blot hybridisations for detection of rare genotypes (dot blot mix). Specimens that were HPV positive after Southern blot hybridisation with a radiolabelled generic probe mix, but were not positive for any specific probe, were considered to be positive for uncharacterised genotypes. For consistency with a related analysis,18 HPV genotypes 16, 18, 26, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, 68, 73, and 82 were considered as primary carcinogens. Finally, the HPV test results were assigned hierarchically to a HPV risk group based on the relative importance (carcinogenicity) of each genotype 19 20: positive for HPV 16; positive for HPV 18 but negative for HPV 16; positive for any carcinogenic HPV genotypes but negative for HPV 16 and HPV 18 (carcinogenic HPV excluding HPV 16 and HPV 18); and negative for carcinogenic HPV genotypes. We abbreviated this hierarchy as HPV 16 positive >HPV 18 positive >other carcinogenic HPV genotypes >negative.

Pathology

All women with possible cervical intraepithelial neoplasia grade II+ at any time, detected by any screening technique, and including a nurse’s concern on gross examination, were referred to colposcopy with guided biopsy of visible lesions and censored from further follow-up. Women diagnosed locally on initial histological evaluation as grade II+ were treated by large loop excision or by inpatient surgery as clinically indicated. MES and DS reviewed histology diagnosed locally as grade II or worse. The final assignment of cases as invasive cancer, grade III, grade II, or

Statistical methods

We used cervical intraepithelial neoplasia grade II+ as our primary end point because grade II was the threshold for treatment. We also used grade III+ in some analyses, recognising that grade II represents an equivocal diagnosis of cervical precancer21 22 whereas grade III is a more definite cervical cancer precursor and is less likely to regress.

We were primarily interested in looking at the simple cumulative incidence and 95% confidence intervals of cervical intraepithelial neoplasia II+ or III+ (see appendix on bmj.com for further details of the statistical analysis) for different combinations of test results to simulate different possible formulations of HPV tests: detection of any carcinogenic HPV without individual identification of the HPV genotype (Hybrid Capture 2, Qiagen, Gaithersburg, MD, USA; Amplicor, Roche Diagnostics, Indianapolis, IN, USA, currently approved for use in Europe only); partial HPV genotyping in which HPV 16 and 18 are detected separately in addition to aggregate detection of all carcinogenic genotypes (Cervista HPV HR Molecular Assay, Third Wave Technologies, Madison, WI, USA, currently approved for use in Europe only with HPV 16/18 Molecular Assay, research use only); and full individual HPV genotyping for all carcinogenic HPV genotypes (Linear Array, Roche Molecular Systems, Alameda, CA, USA, currently approved for use in Europe only). We combined test results for individual genotypes to simulate pools of genotypes. Results were categorised hierarchically according to risk, with HPV persistence as the top category, such that women who had persistence of any genotype were classified as having persistence regardless of whether other genotypes were present at either time point. We also calculated cumulative incidence rate ratios with 95% confidence intervals for cervical intraepithelial neoplasia grade II+ end points by using women who tested positive for carcinogenic HPV at enrolment and negative at the follow-up visit as the reference group because we were interested in differentiating between low risk and high risk women who tested positive for carcinogenic HPV at enrolment. We used simple cumulative incidence curves, rather than more complex modelling, to describe the data because there was no appreciable difference by HPV status in the number of women who underwent censoring treatment or an exit visit (90-95%) (data not shown) and most women attended their annual visits (80%-90% per visit), with only small differences in attendance by HPV status.

We examined patterns of cumulative incidence stratified by age (<30 and ≥30). We also evaluated the impact of having a colposcopic evaluation during the enrolment period or as the result of the six month follow-up visit for 492 women with low grade squamous intraepithelial lesions or cervical intraepithelial neoplasia grade I; 11 (2.2%) women seen at the six month follow-up were censored for cervical abnormalities and excluded from this analysis. Finally, we evaluated by stratification the impact of having non-normal cytology (atypical squamous cells of undetermined significance or more severe) versus negative cytology at the 9-21 month follow-up visit.

Results

Table 1 shows the basic enrolment demographics of the subcohort of 2282 women included in this analysis. The median age was 37.0 years (mean 40.1, range 18-91). Most women were current (21.9%) or former (43.1%) users of oral contraceptives, were married (77.2%), and had had at least one previous smear test (89.7%) at the time of enrolment, although the accuracy of that screening was typically not optimal.16 Of the 2282 women, 542 (23.8%) tested positive for carcinogenic HPV at enrolment.

Table 1

 Characteristics of subcohort of 2282 women (median age 40.1)

	No (%)
Oral contraceptive use:
Data missing	1 (0.0)
Never used	798 (35.0)
Former user	983 (43.1)
Current user	500 (21.9)
Barrier contraceptive use:
Data missing	1 (0.0)
Never used	1278 (56.0)
Former user	770 (33.7)
Current user	233 (10.2)
No of live births
0	127 (5.6)
1-2	757 (33.2)
3-4	630 (27.6)
≥5	768 (33.7)
Marital status:
Married	1762 (77.2)
Separate/divorced	132 (5.8)
Widowed	85 (3.7)
Single	303 (13.3)
Cervical smear before enrolment:
Yes	2047 (89.7)
No	233 (10.2)
Do not know	2 (0.1)
Abnormal smear result before enrolment:
Yes	524 (23.0)
No	1523 (66.7)
Never had one/do not know	235 (10.3)
HPV status at 1 year:
Persistent HPV 16	55 (2.4)
Persistent HPV 18	18 (0.8)
Persistent for specific carcinogenic genotype (not HPV 16/18)	136 (6.0)
Persistent for carcinogenic HPV (not specific genotype)	51 (2.2)
Acquired carcinogenic HPV	125 (5.5)
Cleared carcinogenic HPV	282 (12.4)
Negative (and negative at baseline)	1615 (70.8)

As we have previously reported,18 more than half (282, 52.0%) of the 542 women who were positive for one or more carcinogenic HPV genotypes at enrolment cleared their infection(s) after a year. Among the 209 (38.6% of the 542) women with at least short term persistent carcinogenic HPV infection, 55 (26.3%) had persistent HPV 16, 18 (8.6%) had persistent HPV 18, and the 136 remaining (65.1%) had genotype specific persistence for other carcinogenic genotypes. Twenty five of 209 (12.0%) women had more than one persistent carcinogenic HPV infection for one year or more.

Table 2 shows the numbers of women by HPV status and disease outcome (cervical intraepithelial neoplasia grade II+). Forty six of the 260 women (17.7%) who tested repeatedly positive for carcinogenic HPV were diagnosed with grade II+ during follow-up. By comparison, 4.8% (n=6) of women who were negative and then positive for carcinogenic HPV, 1.8% (n=5) of women who were positive and then negative, and 0.8% (n=13) of women who tested negative twice were diagnosed with grade II+ during follow-up. There were no appreciable differences in the percentage of women with grade II+ for a given HPV status between high risk and low risk women, only differences in the distribution of women with a given HPV status (P<0.001). We therefore consider the population of 2282 in aggregate in our subsequent analyses.

Table 2

 HPV status and outcomes for 2282 women included in analysis

HPV status	All women			High risk women*			Low risk women†
	No of women	No (%) with CIN II+		No of women	No (%) with CIN II+		No of women	No (%) with CIN II+
Repeatedly positive for carcinogenic HPV (Pos/Pos):
Total	260	46 (17.7)		246	44 (17.9)		14	2 (14.3)
HPV 16 persistence	55	20 (36.4)		52	19 (36.5)		3	1 (33.3)
HPV 18 persistence	18	5 (27.8)		18	5 (27.8)		0	0
Type specific persistence	136	21 (15.4)		126	20 (15.9)		10	1 (10.0)
Non-specific persistence	51	0 (0.0)		50	0 (0.0)		1	0 (0.0)
Acquisition (Neg/Pos)	125	6 (4.8)		111	5 (4.5)		14	1 (7.1)
Clearance (Pos/Neg)	282	5 (1.8)		263	4 (1.5)		19	1 (5.3)
Neg/Neg	1615	13 (0.8)		1192	11 (0.9)		423	2 (0.5)
Total	2282	70 (3.1)		1812	64 (3.5)		470	6 (1.3)

*Screen positive or had risk factors (such as five or more lifetime sexual partners) for HPV or cervical neoplasia.

†Screen negative and did not have above risk factors.

Table 3 shows the three year and five year cumulative incidence of cervical intraepithelial neoplasia grade II+ and grade III+ after the 9-21 month follow-up visit . We first examined the cumulative incidence of grade II+ for paired test results, at enrolment, and 9-21 months later for carcinogenic HPV (table 3, fig 2). The three year cumulative incidence of grade II+ was 17.0% (95% confidence interval 12.1% to 22.0%) for women who tested positive for carcinogenic HPV twice (positive/positive), regardless of whether they were the same carcinogenic types (table 3, fig 2). The three year cumulative incidence of cervical intraepithelial neoplasia grade II+ for each of the other combinations of test results was 3.4% (0.1% to 6.8%) for negative/positive (acquired), 1.2% (−0.2% to 2.5%) for positive/negative (cleared), and 0.5% (0.1% to 0.9%) for negative/negative. The five year cumulative incidence of grade II+ for positive/positive, negative/positive, positive/negative, and negative/negative was 23.7% (14.8% to 32.6%), 4.4% (−0.3% to 5.1%), 1.6 (0.04% to 3.1%), and 0.5% (0.1% to 0.9%), respectively. We observed no appreciable differences in the cumulative incidence of grade II+ when we stratified by the median time interval (≤408 v >408 days) between the enrolment and follow-up visits (for example, the three year cumulative incidence of grade II+ for women testing positive for carcinogenic HPV twice in ≤408 and >408 days was 16.90% (9.91% to 23.89%) and 17.21% (10.07% to 24.34%) (data not shown).

Table 3

 Three year and 5 year cumulative incidence rates of cervical intraepithelial neoplasia grade II or more severe (CIN II+) and CIN III+ after repeat measurements of carcinogenic human papillomavirus (HPV) at about 1 year interval (9-21 months)

	No of women	CIN II+								CIN III+
		3 year				5 year				3 year			5 year
		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)		No of cases	Rate* (95% CI)		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)
Carcinogenic HPV persistence	260	38	17.04 (12.05 to 22.03)	14.53 (4.53 to 46.58)		42	23.69 (14.75 to 32.62)	14.99 (5.28 to 42.62)		24	11.27 (6.97 to 15.57)		28	18.38 (7.02 to 15.10)	44.66 (5.94 to 335.88)
Specific genotype persistence	209	38	21.26 (15.18 to 27.33)	18.12 (5.66 to 57.99)		42	29.90 (18.65 to 41.14)	18.92 (6.66 to 53.76)		24	14.22 (8.86 to 19.57)		28	23.63 (11.88 to 35.57)	57.42 (7.63 to 432.02)
Non-persistence	51	0	0.00	0.00		0	0.00	0.00		0	0.00		0	0.00	0.00
HP 16 persistence	55	19	40.77 (26.40 to 55.13)	34.75 (10.66 to 113.26)		19	40.77 (26.40 to 55.13)	25.81 (9.16 to 72.71)		13	30.57 (16.42 to 44.71)		13	30.57 (16.42 to 44.71)	74.28 (9.95 to 554.32)
HPV 18 persistence	18	3	17.46 (−0.58 to 35.50)	14.88 (3.22 to 68.70)		3	17.46 (−0.58 to 35.50)	11.05 (2.67 to 45.73)		1	5.56 (−5.03 to 16.14)		1	5.56 (−5.03 to 16.14)	13.50 (0.88−207.03)
Carcinogenic HPV persistence (not 16 and 18)	187	16	10.00 (5.32 to 14.68)	8.53 (2.51 to 28.91)		20	18.19 (8.02 to 28.37)	11.52 (3.75 to 35.41)		10	6.23 (2.52 to 10.23)		14	14.90 (4.66 to 25.13)	36.20 (4.55 to 287.76)
Acquisition	125	4	3.44 (0.10 to 6.78)	2.93 (0.66 to 12.98)		5	4.44 (−0.28 to 5.08)	2.81 (0.76 to 10.35)		2	1.60 (−0.60 to 3.80)		3	2.63 (−0.28 to 5.08)	6.38 (0.67 to 60.93)
Clearance (reference)‡	282	3	1.17 (−0.15 to 2.50)	1.00		4	1.58 (0.04 to 3.12)	1.00		0	0.00		1	0.41 (−0.39 to 1.22)	1.00
HPV negative	1615	7	0.49 (0.13 to 0.85)	0.42 (0.11 to 1.61)		7	0.49 (0.13 to 0.85)	0.31 (0.09 to 1.06)		4	0.28 (0.01 to 0.56)		4	0.28 (0.01 to 0.56)	0.69 (0.08 to 6.12)

*Cumulative incidence rates.

†Cumulative incidence rate ratio; when no events of CIN II+ occurred in reference group, this could not be calculated (NA).

‡Women who tested positive and then negative for carcinogenic HPV (“clearance”).

Fig 2 Cumulative incidence of cervical intraepithelial neoplasia (CIN) grade II or worse (II+) and grade III+ after repeat measurements of carcinogenic human papillomavirus (HPV) at about one year interval (9-21 months) in women who tested positive for carcinogenic HPV twice (Pos/Pos), positive for carcinogenic HPV at enrolment but negative at follow-up (“cleared”), negative for carcinogenic HPV at enrolment but positive at follow-up (“acquired”), or negative at both time points (Neg/Neg). In right panels the Pos/Pos category is further stratified into those with at least one persistent carcinogenic HPV genotype (persistence) v positive for different carcinogenic HPV genotypes (Pos/Pos (no persistence)), with unstratified Pos/Pos curves shown for reference. Time 0* indicates start time of analysis, 9-21 months after enrolment

Similar relative patterns were observed when we used cervical intraepithelial neoplasia grade III+ as the end point (table 3, fig 2). For example, the three year cumulative incidence of grade III+ for positive/positive, negative/positive, positive/negative, and negative/negative was 11.3% (7.0% to 15.6%), 1.6% (−0.6% to 38.0%), 0% (confidence interval not available), and 0.3% (0.01% to 0.6%), respectively.

Among those women who tested repeatedly positive for carcinogenic HPV, we were interested in the cumulative incidence of cervical intraepithelial neoplasia grade II+ among all women who tested positive twice for carcinogenic HPV compared with the subgroups of women who tested positive twice for carcinogenic HPV and had HPV genotype specific persistence and those tested positive for different HPV genotypes (that is, one HPV genotype cleared and another was acquired). In this population with median age of 40.1, well past the peak of HPV incidence, we found that most women repeatedly positive for carcinogenic HPV had HPV genotype specific persistence (209/260, 80.4%). In this small group of women who tested positive for carcinogenic HPV at both time points but for different genotypes, none developed ≥grade II. Therefore, among those who tested repeatedly positive for carcinogenic HPV, all incident grade II+ and grade III+ diagnoses during follow-up were linked to HPV genotype specific persistence (table 3, fig 2).

Of the 1615 women who tested negative for any carcinogenic HPV genotype at both time points, 104 (6.4%) had short term persistence for non-carcinogenic HPV (data not shown). Only one of these women, however, was diagnosed as a case (cervical intraepithelial neoplasia grade III) over the entire follow-up, yielding a seven year risk for grade II+ and grade III+ of 1.2% (95% confidence interval −1.1% to 3.6%), and this was probably the result of an incident HPV 31 infection acquired after the 9-21 month interval that persisted almost four years before the grade III diagnosis.

We repeated our analysis to examine how age (<30 (n=612, median age 25) v ≥30 years (n=1670, median age 42) modified these patterns (table 4). The three year and five year cumulative incidence of cervical intraepithelial neoplasia grade II+ for women <30 was 19.0% (8.3% to 24.3%) and 20.3% (11.5% to 29.0%), respectively. For women ≥30 years the incidence was 15.8% (9.7% to 21.9%) and 25.9% (12.6% to 39.2%), respectively. Cumulative incidences after other detection patterns (acquisition, clearance) were much lower than in women repeatedly testing positive for carcinogenic HPV.

Table 4

 Three year and 5 year cumulative incidence rates of cervical intraepithelial neoplasia grade II or more severe (CIN II+) and CIN III+ after repeat measurements of carcinogenic human papillomavirus (HPV) at about 1 year interval (9-21 months) according to age of women

	No of women	CIN II+								CIN III+
		3 year				5 year				3 year			5 year
		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)		No of cases	Rate* (95% CI)		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)
Age <30
Carcinogenic HPV persistence	97	16	19.02 (8.33 to 24.23)	19.40 (2.62 to 143.59)		17	20.29 (11.52 to 29.06)	10.60 (2.51 to 44.70)		8	10.06 (3.31 to 16.82)		9	11.47 (4.28 to 18.65)	12.15 (1.57 to 94.32)
Specific genotype persistence	66	16	28.22 (16.18 to 40.27)	28.79 (3.91 to 211.99)		17	30.11 (17.83 to 42.40)	15.73 (3.76 to 65.87)		8	15.25 (5.21 to 25.28)		9	17.48 (6.79 to 28.16)	18.53 (2.40 to 143.08)
Non-persistence	31	0	0.00 ()	0.00		0	0.00	0.00		0	0.00		0	0.00	0.00
HP 16 persistence	22	11	65.91 (40.36 to 91.46)	67.23 (9.20 to 491.08)		11	65.91 (40.36 to 91.46)	34.43 (8.27 to 143.35)		6	40.34 (11.39 to 69.29)		6	40.34 (11.39 to 69.29)	42.76 (5.35 to 341.78)
HPV 18 persistence	7	1	14.29 (−11.6 to 40.21)	14.57 (1.02 to 209.15)		1	14.29 (−11.6 to 40.21)	7.46 (0.77 to 72.62)		0	0.00		0	0.00	0.00
Carcinogenic HPV persistence (not 16 and 18)	68	4	7.05 (0.35 to 13.75)	7.19 (0.82 to 62.93)		5	8.77 (1.39 to 16.14)	4.58 (0.92 to 22.91)		2	3.77 (−1.36 to 8.90)		3	5.56 (−0.55 to 11.67)	5.89 (0.63 to 55.28)
Acquisition	56	2	3.57 (−1.29 to 8.43)	3.64 (0.34 to 39.29)		3	5.92 (−0.65 to 12.50)	3.09 (0.53 to 18.08)		1	1.79 (−1.68 to 5.25)		2	4.18 (−1.56 to 9.92)	4.43 (0.41 to 48.15)
Clearance (reference)‡	125	1	0.98 (−0.93 to 2.89)	1.00		2	1.91 (−0.71 to 4.54)	1.00		0	0.00		1	0.94 (−0.90 to 2.78)	1.00
HPV negative	334	2	0.77 (−0.29 to 1.82)	0.78 (0.07 to 8.53)		2	0.77 (−0.29 to 1.82)	0.40 (0.06 to 2.80)		1	0.38 (−0.37 to 1.13)		1	0.38 (−0.37 to 1.13)	0.41 (0.03 to 6.43)
Age ≥30
Carcinogenic HPV persistence	163	22	15.79 (9.69 to 21.89)	11.64 (2.78 to 48.75)		25	25.88 (12.56 to 39.19)	19.07 (4.37 to 83.12)		16	11.84 (6.34 to 17.34)		19	22.40 (8.75 to 36.05)	NA
Specific genotype persistence	143	22	18.11 (11.21 to 25.02)	13.35 (3.19 to 55.84)		25	30.62 (14.59 to 44.65)	22.56 (5.16 to 98.66)		16	13.67 (7.38 to 19.96)		19	26.85 (10.24 to 43.46)	NA
Non-persistence	20	0	0.00	0.00		0	0.00	0.00		0	0.00		0	0.00	NA
HP 16 persistence	33	8	27.18 (11.09 to 43.26)	20.03 (4.46 to 89.84)		8	27.18 (11.09 to 43.26)	20.03 (4.46 to 89.84)		7	24.67 (8.80 to 40.53)		7	24.67 (8.80 to 40.53)	NA
HPV 18 persistence	11	2	20.45 (−5.14 to 46.05)	15.07 (2.34 to 97.06)		2	20.45 (−5.14 to 46.05)	15.07 (2.34 to 97.06)		1	9.09 (−7.90 to 26.08)		1	9.09 (−7.90 to 26.08)	NA
Carcinogenic HPV persistence (not 16 and 18)	119	12	11.68 (5.42 to 17.93)	8.60 (1.96 to 37.79)		15	23.08 (8.52 to 37.63)	17.01 (3.73 to 77.51)		8	7.87 (2.58 to 13.16)		11	19.77 (4.95 to 34.85)	NA
Acquisition	69	2	3.21 (−1.19 to 7.61)	2.36 (0.34 to 16.54)		2	3.21 (−1.19 to 7.61)	2.36 (0.34 to 16.54)		1	1.45 (−1.37 to 4.27)		1	1.45 (−1.37 to 4.27)	NA
Clearance (reference)‡	157	2	1.36 (−0.51 to 3.23)	1.00		2	1.36 (−0.51 to 3.23)	1.00		0	0.00		0	0.00	NA
HPV negative	1281	5	0.43 (0.05 to 0.81)	0.32 (0.06 to 1.62)		5	0.43 (0.05 to 0.81)	0.32 (0.06 to 1.62)		3	0.26 (−0.03 to 0.56)		3	0.26 (−0.03 to 0.56)	NA

*Cumulative incidence rates.

†Cumulative incidence rate ratio; when no events of CIN II+ occurred in reference group, this could not be calculated (NA).

‡Women who tested positive and then negative for carcinogenic HPV (“clearance”).

Among women with persistently positive results for carcinogenic HPV, a greater proportion of those aged ≥30 (143/163, 87.7%) had persistence of specific genotypes (v different genotypes) than those aged <30 (66/97, 68.0%) (P<0.001, Fisher’s exact) (table 4). Thus, there was qualitatively a greater difference in the cumulative incidence of cervical intraepithelial neoplasia grade II+ among all women who tested repeatedly positive for carcinogenic HPV from the subset of women persistently positive for specific HPV genotypes aged <30 than in those aged ≥30. We found similar patterns in cumulative incidence, with wider confidence intervals because of smaller numbers, for grade III+ (data not shown).

We also considered separate detection of HPV 16 and HPV 18 and the risk of cervical precancer and cancer (table 3, fig 3) after classifying our HPV test results hierarchically according to importance in causing cancer (HPV 16 positive >HPV 18 positive >other carcinogenic HPV genotypes >negative). The three and five year cumulative incidence of cervical intraepithelial neoplasia II+ was 40.8% (26.4% to 55.1%) after short term HPV 16 persistence (table 3, fig 3) and 17.5% (−0.6% to 35.5%) after short term HPV 18 persistence. Repeatedly testing positive for other carcinogenic HPV genotypes as a pool predicted three and five year risks for grade II+ of 10.0% (5.3% to 14.7%) and 18.2% (8.0% to 28.4%), respectively.

Fig 3 Cumulative incidence of cervical intraepithelial neoplasia (CIN) grade II or more severe (grade II+) or grade III+ after repeat measurements of human papillomavirus (HPV) at about one year interval (9-21 months) in women who had persistent HPV 16, had persistent HPV 18, tested positive for carcinogenic HPV twice (Pos/Pos), tested positive for carcinogenic HPV at enrolment but negative at follow-up (“cleared”), tested carcinogenic HPV negative at enrolment but positive at follow-up (“acquired”), and tested negative at both time points (Neg/Neg). In right panels same groups are stratified by age. Time 0* indicates start time of analysis, 9-21 months after enrolment

Among women aged <30, short term persistence of HPV 16 was highly predictive of a subsequent diagnosis of cervical intraepithelial neoplasia grade II+, with a three (and five) year risk of 65.9% (40.4% to 91.5%) (table 4, fig 3). By comparison, among women aged ≥30, the three (and five) year risk after short term HPV 16 persistence was 27.2% (11.1% to 43.3%) (table 4, fig 3). There was no significant difference in the intensity of follow-up (median number of days between visits) by HPV status, although women who were in higher risk HPV groups (such as persistent HPV 16) naturally had fewer follow-up visits on average because of censoring treatments for diagnoses of grade II+ (P<0.001 for trend) (data not shown).

We compared the cumulative incidence of cervical intraepithelial neoplasia grade II+ among all women who tested positive twice for carcinogenic HPV genotypes other than HPV 16 and 18 with the subgroups of women who persistently had specific HPV genotypes and those tested positive for different HPV genotypes (see supplemental figure on bmj.com). Again we found that only a small percentage (51/187, 27.3%) of women repeatedly positive for carcinogenic HPV did not have persistence of specific genotypes, although it is noteworthy that the number of women without viral persistence was the same as when we considered all carcinogenic HPV genotypes. A greater proportion of women aged ≥30 (99/119, 83.2%) who repeatedly tested positive for carcinogenic HPV had persistence of specific HPV genotype (v positive for different HPV genotypes) compared with women aged <30 (37/68, 54.4%) (P<0.001, Fisher’s exact). Consequently, among women aged <30, the cumulative incidence of cervical intraepithelial neoplasia grade II+ (see supplemental figure on bmj.com) among the entire group of women who tested positive twice for carcinogenic HPV genotypes other than HPV 16 and 18 was almost half that for the subgroup of women with confirmed viral persistence of specific HPV genotypes. For example, the three year cumulative incidence of grade II+ among women aged <30 was 7.1% (0.4% to 13.8%) in those who tested positive twice for carcinogenic HPV genotypes other than HPV 16 and 18 and 28.8% (3.9 to 212.0) in the subgroup of women with confirmed persistence of specific HPV genotypes.

We were also interested in whether having abnormal cytology (atypical squamous cells of undetermined significance or worse) versus normal cytology at the follow-up visit modified the observed patterns of HPV persistence and risk of cervical intraepithelial neoplasia grade II+ or III+. As shown in table 5, the patterns observed for other groups were qualitatively similar except that women with atypical squamous cells of undetermined significance or worse generally had higher cumulative incidence of disease than those who had normal cytology, most noticeably in the earlier follow-up times.

Table 5

 Three year and 5 year cumulative incidence rates of cervical intraepithelial neoplasia grade II or more severe (CIN II+) and CIN III+ after repeat measurements of carcinogenic human papillomavirus (HPV) at about 1 year interval (9-21 months) according to cytology results

	No of women	CIN II+								CIN III+
		3 year				5 year				3 year				5 year
		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)		No of cases	Rate* (95% CI)			No of cases	Rate* (95% CI)	Rate ratio† (95%CI)
ASCUS or more severe cytology
Carcinogenic HPV persistence	89	21	28.79 (18.12 to 39.46)	NA		21	28.79 (18.12 to 39.46)	NA		11	15.00 (6.53 to 23.48)			11	15.00 (6.53 to 23.48)	NA
Specific genotype persistence	73	21	34.93 (22.49 to 47.36)	NA		21	34.93 (22.49 to 47.36)	NA		11	18.73 (8.25 to 29.20)			11	18.73 (8.25 to 29.20)	NA
Non-persistence	16	0	0.00	NA		0	0.00	NA		0	0.00			0	0.00	NA
HP 16 persistence	17	8	58.18 (30.88 to 85.48)	NA		8	58.18 (30.88 to 85.48)	NA		4	27.94 (3.29 to 52.59)			4	27.94 (3.29 to 52.59)	NA
HPV 18 persistence	9	3	37.78 (2.91 to 72.65)	NA		3	37.78 (2.91 to 72.65)	NA		1	11.11 (−9.42 to 31.64)			1	11.11 (−9.42 to 31.64)	NA
Carcinogenic HPV persistence (not 16 and 18)	63	10	19.62 (8.51 to 30.73)	NA		10	19.62 (8.51 to 30.73)	NA		6	11.80 (2.71 to 20.90)			6	11.80 (2.71 to 20.90)	NA
Acquisition	31	1	3.23 (−2.99 to 9.45)	NA		1	3.23 (−2.99 to 9.45)	NA		1	3.23 (−2.99 to 9.45)			1	3.23 (−2.99 to 9.45)	NA
Clearance (reference)‡	30	0	0.00	NA		0	0.00	NA		0	0.00			0	0.00	NA
HPV negative	115	3	2.86 (−0.36 to 6.07)	NA		3	2.86 (−0.36 to 6.07)	NA		2	2.00 (−2.00 to 4.76)			2	2.00 (−2.00 to 4.76)	NA
Negative cytology
Carcinogenic HPV persistence	162	16	11.47 (6.15 to 16.79)	8.24 (2.44 to 27.83)		20	23.22 (9.00 to 37.44)	12.38 (3.92 to 39.06)		12	9.12 (4.19 to 14.05)			16	21.18 (6.72 to 35.64)	43.21 (5.45 to 342.72)
Specific genotype persistence	129	16	14.50 (7.89 to 21.10)	8.29 (2.40 to 28.59)		20	28.86 (11.91 to 44.80)	15.11 (4.87 to 46.90)		12	11.61 (5.42 to 17.80)			16	25.94 (9.11 to 42.77)	52.92 (6.74 to 415.20)
Non-persistence	33	0	0.00	0.00		0	0.00	0.00		0	0.00			0	0.00	0.00
HP 16 persistence	36	10	32.76 (15.92 to 49.60)	23.52 (6.82 to 81.1)		10	32.76 (15.92 to 49.60)	17.46 (5.81 to 52.45)		8	28.80 (11.89 to 45.72)			8	28.80 (11.89 to 45.72)	58.76 (7.63 to 452.57)
HPV 18 persistence	9	0	0.00	0.00		0	0.00	0.00		0	0.00			0	0.00	0.00
Carcinogenic HPV persistence (not 16 and 18)	117	6	5.91 (1.31 to 10.51)	4.25 (1.08 to 16.68)		10	20.25 (3.76 to 36.74)	10.79 (3.04 to 38.37)		4	4.08 (0.16 to 8.00)			8	18.70 (2.03 to 35.36)	38.14 (4.45 to 327.05)
Acquisition	88	3	3.69 (−0.44 to 7.81)	2.65 (0.54 to 12.95)		4	5.01 (0.20 to 9.82)	2.67 (0.68 to 10.47)		1	1.14 (−1.08 to 3.35)			1	2.49 (−0.93 to 5.91)	5.08 (0.47 to 55.45)
Clearance (reference)‡	236	3	1.39 (−0.18 to 2.96)	1.00		4	1.88 (0.05 to 3.70)	1.00		0	0.00			1	0.49 (−0.47 to 1.45)	1.00
HPV negative	1449	4	0.32 (0.01 to 0.64)	0.23 (0.05 to 1.03)		4	0.32 (0.01 to 0.64)	0.17 (0.04 to 0.68)		2	0.16 (−0.06 to 0.39)			2	0.16 (−0.06 to 0.39)	0.33 (0.03 to 3.63)

ASCUS=atypical squamous cells of undetermined significance.

*Cumulative incidence rates.

†Cumulative incidence rate ratio; when no events of CIN II+ occurred in reference group, this could not be calculated (NA).

‡Women who tested positive and then negative for carcinogenic HPV (“clearance”).

Finally, we considered whether short term viral persistence strongly predicted cervical intraepithelial neoplasia grade II+ after colposcopy (conducted during the enrolment phase) without findings of grade II+ (table 6). We again observed a high risk of grade II+ and III+ with short term HPV viral persistence, especially for HPV 16, whether or not a woman had recently undergone colposcopy to rule out cervical intraepithelial neoplasia grade II+.

Table 6

 Three year and 5 year cumulative incidence rates of cervical intraepithelial neoplasia grade II or more severe (CIN II+) and CIN III+ after repeat measurements of carcinogenic human papillomavirus (HPV) at about 1 year interval (9-21 months) according to whether women underwent colposcopy during time interval

	No of women	CIN II+								CIN III+
		3 year				5 year				3 year			5 year
		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)		No of cases	Rate* (95% CI)		No of cases	Rate* (95% CI)	Rate ratio† (95% CI)
Colposcopy
Carcinogenic HPV persistence	144	27	21.56 (14.28 to 28.84)	11.31 (3.50 to 36.54)		28	22.48 (15.07 to 29.89)	11.80 (3.66 to 38.02)		17	14.37 (7.97 to 20.78)		18	15.38 (8.75 to 22.01)	NA
Specific genotype persistence	115	27	27.14 (18.28 to 35.99)	14.24 (4.42 to 45.85)		28	28.35 (19.33 to 37.38)	14.88 (4.63 to 47.79)		17	18.38 (10.34 to 26.41)		18	19.74 (11.40 to 28.07)	NA
Non-persistence	29	0	0.00	0.00		0	0.00	0.00		0	0.00		0	0.00	NA
HP 16 persistence	35	11	37.45 (19.58 to 55.33)	19.65 (5.80 to 66.58)		11	37.45 (19.58 to 55.33)	19.65 (5.80 to 66.58)		7	26.79 (9.38 to 44.20)		7	26.79 (9.38 to 44.20)	NA
HPV 18 persistence	11	3	27.27 (0.95 to 53.59)	14.31 (3.26 to 62.90)		3	27.27 (0.95 to 53.59)	14.31 (3.26 to 62.90)		1	9.09 (−7.90 to 26.08)		1	9.09 (−7.90 to 26.08)	NA
Carcinogenic HPV persistence (not 16 and 18)	98	13	15.55 (7.73 to 23.36)	8.16 (2.38 to 27.91)		14	16.87 (8.76 to 24.97)	8.85 (2.61 to 30.02)		9	11.00 (4.17 to 17.82)		10	12.39 (5.15 to 19.63)	NA
Acquisition	79	2	2.53 (−0.93 to 6.00)	1.33 (0.23 to 7.80)		3	4.16 (−0.49 to 8.80)	2.18 (0.45 to 10.63)		2	2.53 (−0.93 to 6.00)		3	4.16 (−0.49 to 8.80)	NA
Clearance (reference)‡	170	3	1.91 (−0.23 to 4.05)	1.00		3	1.91 (−0.23 to 4.05)	1.00		0	0.00		0	0.00	NA
HPV negative	985	5	0.58 (0.07 to 1.09)	0.30 (0.07 to 1.26)		5	0.58 (0.07 to 1.09)	0.30 (0.07 to 1.26)		4	0.46 (0.01 to 0.91)		4	0.46 (0.01 to 0.91)	NA
No colposcopy
Carcinogenic HPV persistence	116	11	11.14 (4.85 to 17.42)	NA		14	25.73 (7.64 to 43.81)	25.21 (3.17 to 200.37)		7	7.30 (2.02 to 12.57)		10	22.51 (3.93 to 41.10)	22.06 (2.65 to 183.37)
Specific genotype persistence	94	11	13.79 (6.11 to 21.46)	NA		14	33.98 (10.10 to 57.86)	33.30		7	9.13 (2.58 to 15.67)		10	30.41 (5.50 to 55.31)	29.80 (3.59 to 247.02)
Non-persistence	22	0	0.00	NA		0	0.00	0.00		0	0.00		0	0.00	0.00
HPV 16 persistence	20	8	45.36 (21.77 to 68.94)	NA		8	45.36 (21.77 to 68.94)	44.45 (5.91 to 334.45)		6	35.71 (12.44 to 58.99)		6	35.71 (12.44 to 58.99)	35.00 (4.48 to 273.52)
HPV 18 persistence	7	0	0.00	NA		0	0.00	0.00		0	0.00		0	0.00	0.00
Carcinogenic HPV persistence (not 16 and 18)	89	3	3.66 (−0.44 to 7.76)	NA		6	20.92 (0.49 to 41.34)	20.50 (2.32 to 181.49)		1	1.12 (−1.07 to 3.31)		4	18.83 (−1.92 to 39.59)	18.46 (1.97 to 173.34)
Acquisition	46	2	4.97 (−1.01 to 11.74)	NA		2	4.97 (−1.01 to 11.74)	4.87 (0.45 to 52.59)		0	0.00		0	0.00	0.00
Clearance (reference)†	112	0	0.00	NA		1	1.02 (−0.97 to 3.01)	1.00		0	0.00		1	1.02 (−0.97 to 3.01)	1.00
HPV negative	630	2	0.35 (−0.14 to 0.83)	NA		2	0.35 (−0.14 to 0.83)	0.34 (0.03 to 3.75)		0	0.00		0	0.00	0.00

*Cumulative incidence rates.

†Cumulative incidence rate ratio; when no events of CIN II+ occurred in reference group, this could not be calculated (NA).

‡Women who tested positive and then negative for carcinogenic HPV (“clearance”).

Discussion

Testing for short term HPV persistence might be clinically useful for assessing the risk of cervical intraepithelial neoplasia grade II+ among women who test positive for carcinogenic HPV. We carried out our study in a subcohort of women enrolled in our population based cohort in Guanacaste, Costa Rica. We focused on measurements over about one year (9-21 months) because there was previous evidence that measuring persistence over that duration begins to differentiate between transient and clinically relevant HPV infections.5 23 24 In the United States, one year is the recommended follow-up time for women who have an abnormal screening result but do not have concurrent, colposcopically detected cervical intraepithelial neoplasia grade II+.11

Women who tested positive twice for carcinogenic HPV had an increased risk of grade II+ and III+, while the risk in women who test negative for carcinogenic HPV at either or both time points was low. We did not observe any appreciable differences in the risks between those women with a shorter and longer time intervals between the enrolment and follow-up visit, suggesting that these findings are robust to variability in which women return for follow-up testing. Among those who tested positive twice for carcinogenic HPV, all subsequent diagnoses of cervical intraepithelial neoplasia grade II+ were linked to persistence of a specific HPV genotype. With the exception of HPV 16 and possibly HPV 18, however, detection of persistence of a specific genotype did not differentiate women at risk for grade II+ qualitatively better than repeated detection of an aggregate of carcinogenic HPV types. Few women had HPV 18 at enrolment, which led to unstable estimates of related cumulative incidence of grade II+. Yet, the weight of evidence regarding the utility of HPV 18 detection,10 25 including it being the second leading cause of cancer and its strong association with adenocarcinoma,20 which is on the rise in the US26 and Europe27 and might be more difficult to detect by cytology based screening, would argue in favour of its separate detection.

In summary, repeat testing (versus one time tests) might further divide the population into low risk and high risk for incipient precancerous lesions. Detection of HPV 16 and might be particularly useful to identify women at risk for cervical precancer.

Previous studies

Previous studies that looked at repeat testing with polymerase chain reaction28 and by hybrid capture II29 over a two year interval found similar patterns and similar associations and risks. In our analysis, however, women who first had positive results on testing and then had negative results seemed to have a level of risk that was similar to those who tested negative twice, whereas women who tested positive then negative on hybrid capture II in the study by Kjaër et al29 had a level of risk that was somewhat higher than those who tested negative twice. We cannot explain the discrepancy between the two reports.

We observed, as have others,28 that persistence of a specific HPV genotype predicted a risk of cervical intraepithelial neoplasia grade II+ only slightly more strongly than the risk of testing positive twice for the pool of carcinogenic HPV over a short term interval, especially at older ages. The greater likelihood of testing positive for carcinogenic HPV because of different HPV genotypes and persistence of a specific genotype was greater in women aged <30 than in women aged ≥30, perhaps because more younger women have prevalently detected transient infections30 and are more likely to clear and then acquire a new infection than older women. This suggestion is supported by the observed difference in the percentage of women aged <30 and ≥30 who tested repeatedly positive for carcinogenic HPV but did not have persistence of a specific HPV genotype (32.0% v 12.3%).

Strengths and weaknesses

Our study had several strengths. The cohort in Guanacaste was a true population sample, with high participation rates at enrolment and good rates of follow-up. There were no obvious biases in follow-up in relation to the short term HPV status that would invalidate our findings. Finally, we relied on consensus review of histological end points to reduce misclassification.

There were also several limitations. Firstly, despite the size of the cohort and subcohort, there were few outcomes of precancer, resulting in unstable estimates of risk. Thus any losses to follow-up could influence the absolute estimates of cumulative incidence; however, as both HPV infection and cervical intraepithelial neoplasia grade II and III are asymptomatic, it is unlikely that there is a differential effect and the relative patterns are unlikely to change significantly. In addition, because of small numbers of outcomes, in most analyses we included grade II in our definition of cervical precancer and cancer. While histological grade II is the typical clinical threshold for treatment, there is an increasing awareness that it is an equivocal diagnosis of cervical precancer.21 Larger studies or pooled data analyses of existing cohorts, or both, are needed to more precisely describe these risks of cervical intraepithelial neoplasia grade III+ related to short term persistence.

Secondly, our analysis included only prevalently detected HPV infections. We did not have enough cases of cervical intraepithelial neoplasia grade II+ after incident infections to describe the risk after short term persistence. We therefore cannot apply our findings to determine the utility of measuring persistence of incident infections for risk stratification. This issue will become important if HPV testing is used in periodic screening in the coming years. Given that a proportion of prevalent infections will have already persisted for an unknown amount of time, and that the likelihood of continued persistence increases with duration of past persistence,12 13 it is reasonable to expect that monitoring incident infections for more than a year might be necessary to achieve similar risk stratification as has been achieved for prevalently detected infections. It is the duration of persistence—that is, the “age of the infection”—that predicts progression with specific HPV genotypes.13

Thirdly, we needed to make assumptions that compliance with scheduled clinic visits was independent of the risk of the end point to justify our statistical approach. Note that the standard Kaplan-Meier approach gives estimates of cumulative risk that are too low: it assumes that women who are not diagnosed with an end point have not experienced the end point, even though here the diagnosis is delayed simply because they did not appear during the interval for their visit.

Because of less than perfect sensitivity of colposcopy,31 we cannot truly distinguish between missed prevalent and incident disease, nor can we separate missed miniscule foci of prevalent disease ensuring viral persistence versus viral persistence predicting the progression to cervical intraepithelial neoplasia grade II+. Many histologically confirmed cases of grade II+ (n=144) were diagnosed during the enrolment phase. It seems likely that some cases detected during follow-up undoubtedly were present but missed by enrolment colposcopy, just as in routine clinical practice. The purpose of our analysis, however, was to describe the risk of having or developing cervical intraepithelial neoplasia grade II+ after patterns of HPV detection and to determine the best format of detection with HPV genotyping rather than making any distinctions about the “origins” of the viral persistence or cervical intraepithelial neoplasia grade II+.

Clinical implications

Monitoring of prevalently detected HPV infections for short term persistence might be useful for identifying the women positive for carcinogenic HPV at risk of cervical intraepithelial neoplasia grade II+ in the following years.

A validated method of HPV genotyping might allow clinically useful monitoring of HPV 16 and perhaps HPV 18, beginning at age 25 when the risk of precancer becomes non-trivial. For women between the ages of 25-30, it will be especially important for clinicians to wait for evidence of persistence rather than act on the first positive test for HPV 16 and 18. It is less clear whether there is clinical utility for detecting persistence of a specific HPV genotype among those repeatedly positive for carcinogenic HPV genotypes other than HPV 16 and 18. Specifically monitoring the other carcinogenic HPV genotypes does differentiate women with persistent specific HPV infections who are at risk of cervical intraepithelial neoplasia grade II+ from those who test positive for different HPV genotypes and are not at risk of grade II+. Most women who tested repeatedly positive for carcinogenic HPV had viral persistence, although less so for women under 30. As a consequence, detection of persistence of a specific HPV genotype of other carcinogenic genotypes did not provide significant risk stratification above that achieved by pooled detection of all other carcinogenic genotypes. Thus, it might be more practical to specifically monitor only the riskiest HPV genotypes, such as HPV 16 and 18, and detect the other carcinogenic genotypes in aggregate, accepting the trade-off that a fraction of repeat positives for other carcinogenic genotypes do not represent HPV persistence in exchange for greater reliability for detecting those that do. Further evaluation of these trade-offs and accuracy versus ease of use,32 with consideration of any cost differences, is warranted.

HPV persistence increases the risk of cervical abnormalities

Repeat testing (versus a one time test) for carcinogenic HPV improves the positive predictive value while maintaining excellent negative predictive values for cervical intraepithelial neoplasia grade II or more severe (II+) and grade III+

Women with short term persistent HPV 16 are at high risk for cervical intraepithelial neoplasia grade II+ and III+

There was little difference in the cumulative incidence of cervical intraepithelial neoplasia grade II+ and III+ between testing positive twice for any carcinogenic HPV genotype (same or different genotype) versus testing positive twice for the same carcinogenic genotype, particularly for women aged ≥30