Literature DB >> 19626706

Modularity of intrinsic disorder in the human proteome.

Melissa M Pentony1, David T Jones.   

Abstract

Predicting regions of disorder has become of increasing interest when determining protein structure and function. With approximately 33% of eukaryotic proteins having significant disordered regions, and an increasing occurrence of disorder in higher organisms, an analysis of the importance of disorder from an evolutionary perspective was clearly warranted. Focusing on the human proteome, we have studied how abundant disorder is and its relevance to protein function and structure. We have shown that disordered regions frequently appear to be independent functional units, and judged by complete association to certain protein domains, may be evolutionarily conserved. Our work also supports previous analyses on association between disorder and alternate splicing and provides support for the modularity of disorder by showing that with respect to splicing events, disordered regions frequently appear to be spliced as whole units. (c) 2009 Wiley-Liss, Inc.

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Year:  2010        PMID: 19626706     DOI: 10.1002/prot.22504

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  36 in total

1.  Expanding the proteome: disordered and alternatively folded proteins.

Authors:  H Jane Dyson
Journal:  Q Rev Biophys       Date:  2011-07-01       Impact factor: 5.318

Review 2.  Comprehensive review of methods for prediction of intrinsic disorder and its molecular functions.

Authors:  Fanchi Meng; Vladimir N Uversky; Lukasz Kurgan
Journal:  Cell Mol Life Sci       Date:  2017-06-06       Impact factor: 9.261

3.  Analyses of the general rule on residue pair frequencies in local amino acid sequences of soluble, ordered proteins.

Authors:  Matsuyuki Shirota; Kengo Kinoshita
Journal:  Protein Sci       Date:  2013-04-29       Impact factor: 6.725

Review 4.  Proteins that switch folds.

Authors:  Philip N Bryan; John Orban
Journal:  Curr Opin Struct Biol       Date:  2010-06-28       Impact factor: 6.809

5.  Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life.

Authors:  Zhenling Peng; Jing Yan; Xiao Fan; Marcin J Mizianty; Bin Xue; Kui Wang; Gang Hu; Vladimir N Uversky; Lukasz Kurgan
Journal:  Cell Mol Life Sci       Date:  2014-06-18       Impact factor: 9.261

6.  IDPology of the living cell: intrinsic disorder in the subcellular compartments of the human cell.

Authors:  Bi Zhao; Akila Katuwawala; Vladimir N Uversky; Lukasz Kurgan
Journal:  Cell Mol Life Sci       Date:  2020-09-30       Impact factor: 9.261

7.  Alternative RNA Splicing as a Potential Major Source of Untapped Molecular Targets in Precision Oncology and Cancer Disparities.

Authors:  Timothy J Robinson; Jennifer A Freedman; Muthana Al Abo; April E Deveaux; Bonnie LaCroix; Brendon M Patierno; Daniel J George; Steven R Patierno
Journal:  Clin Cancer Res       Date:  2019-02-12       Impact factor: 12.531

8.  Catalytic and chaperone-like functions in an intrinsically disordered protein associated with desiccation tolerance.

Authors:  Sohini Chakrabortee; Filip Meersman; Gabriele S Kaminski Schierle; Carlos W Bertoncini; Brian McGee; Clemens F Kaminski; Alan Tunnacliffe
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-30       Impact factor: 11.205

9.  Presence and structure-activity relationship of intrinsically disordered regions across mucins.

Authors:  Joseph Carmicheal; Pranita Atri; Sunandini Sharma; Sushil Kumar; Ramakanth Chirravuri Venkata; Prakash Kulkarni; Ravi Salgia; Dario Ghersi; Sukhwinder Kaur; Surinder K Batra
Journal:  FASEB J       Date:  2020-01-05       Impact factor: 5.191

Review 10.  Classification of intrinsically disordered regions and proteins.

Authors:  Robin van der Lee; Marija Buljan; Benjamin Lang; Robert J Weatheritt; Gary W Daughdrill; A Keith Dunker; Monika Fuxreiter; Julian Gough; Joerg Gsponer; David T Jones; Philip M Kim; Richard W Kriwacki; Christopher J Oldfield; Rohit V Pappu; Peter Tompa; Vladimir N Uversky; Peter E Wright; M Madan Babu
Journal:  Chem Rev       Date:  2014-04-29       Impact factor: 60.622

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