Literature DB >> 31908009

Presence and structure-activity relationship of intrinsically disordered regions across mucins.

Joseph Carmicheal1, Pranita Atri1, Sunandini Sharma1, Sushil Kumar1,2, Ramakanth Chirravuri Venkata1, Prakash Kulkarni3, Ravi Salgia3, Dario Ghersi4, Sukhwinder Kaur1,2, Surinder K Batra1,2.   

Abstract

Many members of the mucin family are evolutionarily conserved and are often aberrantly expressed and glycosylated in various benign and malignant pathologies leading to tumor invasion, metastasis, and immune evasion. The large size and extensive glycosylation present challenges to study the mucin structure using traditional methods, including crystallography. We offer the hypothesis that the functional versatility of mucins may be attributed to the presence of intrinsically disordered regions (IDRs) that provide dynamism and flexibility and that the IDRs offer potential therapeutic targets. Herein, we examined the links between the mucin structure and function based on IDRs, posttranslational modifications (PTMs), and potential impact on their interactome. Using sequence-based bioinformatics tools, we observed that mucins are predicted to be moderately (20%-40%) to highly (>40%) disordered and many conserved mucin domains could be disordered. Phosphorylation sites overlap with IDRs throughout the mucin sequences. Additionally, the majority of predicted O- and N- glycosylation sites in the tandem repeat regions occur within IDRs and these IDRs contain a large number of functional motifs, that is, molecular recognition features (MoRFs), which directly influence protein-protein interactions (PPIs). This investigation provides a novel perspective and offers an insight into the complexity and dynamic nature of mucins.
© 2020 Federation of American Societies for Experimental Biology.

Entities:  

Keywords:  glycoprotein; intrinsically disordered protein; protein structure; protein-protein interaction

Mesh:

Substances:

Year:  2020        PMID: 31908009      PMCID: PMC7018569          DOI: 10.1096/fj.201901898RR

Source DB:  PubMed          Journal:  FASEB J        ISSN: 0892-6638            Impact factor:   5.191


  117 in total

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Journal:  Bioinformatics       Date:  2005-06-14       Impact factor: 6.937

Review 4.  Introducing protein intrinsic disorder.

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5.  MUC5AC protects pancreatic cancer cells from TRAIL-induced death pathways.

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Review 6.  Cell cycle regulation by the intrinsically disordered proteins p21 and p27.

Authors:  Mi-Kyung Yoon; Diana M Mitrea; Li Ou; Richard W Kriwacki
Journal:  Biochem Soc Trans       Date:  2012-10       Impact factor: 5.407

7.  Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners.

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8.  Intrinsic Disorder in Transmembrane Proteins: Roles in Signaling and Topology Prediction.

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9.  D²P²: database of disordered protein predictions.

Authors:  Matt E Oates; Pedro Romero; Takashi Ishida; Mohamed Ghalwash; Marcin J Mizianty; Bin Xue; Zsuzsanna Dosztányi; Vladimir N Uversky; Zoran Obradovic; Lukasz Kurgan; A Keith Dunker; Julian Gough
Journal:  Nucleic Acids Res       Date:  2012-11-29       Impact factor: 16.971

10.  MUC16 contributes to the metastasis of pancreatic ductal adenocarcinoma through focal adhesion mediated signaling mechanism.

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Journal:  Genes Cancer       Date:  2016-03
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2.  Characterization of recombinant β subunit of human MUC4 mucin (rMUC4β).

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  3 in total

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